RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 SERPINF1P36955 418 aa12.22□□□□□ -0.45
UPF3A-204ENST00000475218 EFNA4P52798 201 aa12.22□□□□□ -0.45
UPF3A-204ENST00000475218 MSMPQ1L6U9 139 aa12.22□□□□□ -0.45
UPF3A-204ENST00000475218 COQ5Q5HYK3 327 aa12.22□□□□□ -0.45
UPF3A-204ENST00000475218 SLC30A8Q8IWU4 369 aa12.22□□□□□ -0.45
UPF3A-204ENST00000475218 C10orf53Q8N6V4 93 aa12.22□□□□□ -0.45
UPF3A-204ENST00000475218 OR8J3Q8NGG0 315 aa12.22□□□□□ -0.45
UPF3A-204ENST00000475218 RHNO1Q9BSD3 238 aa12.22□□□□□ -0.45
UPF3A-204ENST00000475218 GMPR2Q9P2T1 348 aaKnown RBP12.22□□□□□ -0.45
UPF3A-204ENST00000475218 TMEM129A0AVI4 362 aa12.21□□□□□ -0.45
UPF3A-204ENST00000475218 C11orf98E9PRG8 122 aa12.21□□□□□ -0.45
UPF3A-204ENST00000475218 MRASO14807 208 aa12.21□□□□□ -0.45
UPF3A-204ENST00000475218 SERPINI2O75830 405 aa12.21□□□□□ -0.45
UPF3A-204ENST00000475218 CH25HO95992 272 aa12.21□□□□□ -0.45
UPF3A-204ENST00000475218 F12P00748 615 aaPredicted RBP12.21□□□□□ -0.45
UPF3A-204ENST00000475218 OR4A8P0C604 315 aa12.21□□□□□ -0.45
UPF3A-204ENST00000475218 ASAH2BP0C7U1 165 aa12.21□□□□□ -0.45
UPF3A-204ENST00000475218 IFNGR1P15260 489 aa12.21□□□□□ -0.45
UPF3A-204ENST00000475218 THBS4P35443 961 aa12.21□□□□□ -0.45
UPF3A-204ENST00000475218 ARFIP2P53365 341 aa12.21□□□□□ -0.45
UPF3A-204ENST00000475218 PPP2R2BQ00005 443 aa12.21□□□□□ -0.45
UPF3A-204ENST00000475218 GUCY1A3Q02108 690 aa12.21□□□□□ -0.45
UPF3A-204ENST00000475218 CYLC2Q14093 348 aaPredicted RBP12.21□□□□□ -0.45
UPF3A-204ENST00000475218 EFNB3Q15768 340 aa12.21□□□□□ -0.45
UPF3A-204ENST00000475218 CLEC2AQ6UVW9 174 aa12.21□□□□□ -0.45
UPF3A-204ENST00000475218 SNX32Q86XE0 403 aa12.21□□□□□ -0.45
UPF3A-204ENST00000475218 ANKS4BQ8N8V4 417 aa12.21□□□□□ -0.45
UPF3A-204ENST00000475218 NUP37Q8NFH4 326 aa12.21□□□□□ -0.45
UPF3A-204ENST00000475218 FGFBP3Q8TAT2 258 aa12.21□□□□□ -0.45
UPF3A-204ENST00000475218 MS4A3Q96HJ5 214 aa12.21□□□□□ -0.45
UPF3A-204ENST00000475218 MDFIQ99750 246 aa12.21□□□□□ -0.45
UPF3A-204ENST00000475218 PLK3Q9H4B4 646 aa12.21□□□□□ -0.45
UPF3A-204ENST00000475218 VWC2LB2RUY7 222 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 KPNA4O00629 521 aaPredicted RBP12.2□□□□□ -0.46
UPF3A-204ENST00000475218 AKAP8O43823 692 aaKnown RBP12.2□□□□□ -0.46
UPF3A-204ENST00000475218 SHOX2O60902 331 aaPredicted RBP12.2□□□□□ -0.46
UPF3A-204ENST00000475218 ADORA3P0DMS8 318 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 ZNF14P17017 642 aaPredicted RBP12.2□□□□□ -0.46
UPF3A-204ENST00000475218 AHCYP23526 432 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 PAX7P23759 505 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 BIDP55957 195 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 CHRNB3Q05901 458 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 LOXL1Q08397 574 aaPredicted RBP12.2□□□□□ -0.46
UPF3A-204ENST00000475218 ZP4Q12836 540 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 INTS11Q5TA45 600 aaKnown RBP12.2□□□□□ -0.46
UPF3A-204ENST00000475218 LRFN4Q6PJG9 635 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 VHLLQ6RSH7 139 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 NKAIN4Q8IVV8 208 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 C10orf82Q8WW14 230 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 TMEM54Q969K7 222 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 CCDC134Q9H6E4 229 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 RRP15Q9Y3B9 282 aaKnown RBP12.2□□□□□ -0.46
UPF3A-204ENST00000475218 LOC100653049A0A140TA62 436 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 KRT34O76011 436 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 PDE5AO76074 875 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 TROVE2P10155 538 aaKnown RBP eCLIP12.2□□□□□ -0.46
UPF3A-204ENST00000475218 B4GALT1P15291 398 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 ARR3P36575 388 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 UGT2B15P54855 530 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 DSCR9P59020 149 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 NPRL3Q12980 569 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 TMEM249Q2WGJ8 235 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 TTC33Q6PID6 262 aaPredicted RBP12.2□□□□□ -0.46
UPF3A-204ENST00000475218 ZNF813Q6ZN06 617 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 CARM1Q86X55 608 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 OR4F15Q8NGB8 312 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 PFN4Q8NHR9 129 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 FAM168AQ92567 244 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 TNFRSF13CQ96RJ3 184 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 DOK1Q99704 481 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 SLC19A3Q9BZV2 496 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 ZNF442Q9H7R0 627 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 C20orf141Q9NUB4 165 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 SH3GLB1Q9Y371 365 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 PMF1-BGLAPU3KQ54 211 aa12.2□□□□□ -0.46
UPF3A-204ENST00000475218 COL6A5A8TX70 2615 aa12.19□□□□□ -0.46
UPF3A-204ENST00000475218 RTTNQ86VV8 2226 aa12.19□□□□□ -0.46
UPF3A-204ENST00000475218 SVEP1Q4LDE5 3571 aa12.19□□□□□ -0.46
UPF3A-204ENST00000475218 NPPAP01160 153 aa12.19□□□□□ -0.46
UPF3A-204ENST00000475218 OR1E2P47887 323 aa12.19□□□□□ -0.46
UPF3A-204ENST00000475218 LSM11P83369 360 aaKnown RBP eCLIP12.19□□□□□ -0.46
UPF3A-204ENST00000475218 RUNX1T1Q06455 604 aa12.19□□□□□ -0.46
UPF3A-204ENST00000475218 PIGFQ07326 219 aa12.19□□□□□ -0.46
UPF3A-204ENST00000475218 MELKQ14680 651 aa12.19□□□□□ -0.46
UPF3A-204ENST00000475218 SLC35D2Q76EJ3 337 aa12.19□□□□□ -0.46
UPF3A-204ENST00000475218 ZCCHC24Q8N2G6 241 aaKnown RBP12.19□□□□□ -0.46
UPF3A-204ENST00000475218 OR6X1Q8NH79 312 aa12.19□□□□□ -0.46
UPF3A-204ENST00000475218 SLC26A7Q8TE54 656 aa12.19□□□□□ -0.46
UPF3A-204ENST00000475218 TMEM255BQ8WV15 326 aa12.19□□□□□ -0.46
UPF3A-204ENST00000475218 MPP4Q96JB8 637 aa12.19□□□□□ -0.46
UPF3A-204ENST00000475218 FOXB1Q99853 325 aa12.19□□□□□ -0.46
UPF3A-204ENST00000475218 KCNS3Q9BQ31 491 aa12.19□□□□□ -0.46
UPF3A-204ENST00000475218 ULBP2Q9BZM5 246 aa12.19□□□□□ -0.46
UPF3A-204ENST00000475218 MOV10Q9HCE1 1003 aaKnown RBP12.19□□□□□ -0.46
UPF3A-204ENST00000475218 NANSQ9NR45 359 aa12.19□□□□□ -0.46
UPF3A-204ENST00000475218 ARMCX1Q9P291 453 aa12.19□□□□□ -0.46
UPF3A-204ENST00000475218 ZNF229Q9UJW7 825 aa12.19□□□□□ -0.46
UPF3A-204ENST00000475218 ZNF726A6NNF4 738 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 BBIP1A8MTZ0 92 aa12.18□□□□□ -0.46
UPF3A-204ENST00000475218 B9A039 149 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms