RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 OR4A8P0C604 315 aa16.08■□□□□ 0.16
COL7A1-209ENST00000474432 THBS4P35443 961 aa16.08■□□□□ 0.16
COL7A1-209ENST00000474432 ARR3P36575 388 aa16.08■□□□□ 0.16
COL7A1-209ENST00000474432 ZP4Q12836 540 aa16.08■□□□□ 0.16
COL7A1-209ENST00000474432 SF3A3Q12874 501 aaKnown RBP eCLIP16.08■□□□□ 0.16
COL7A1-209ENST00000474432 TMEM249Q2WGJ8 235 aa16.08■□□□□ 0.16
COL7A1-209ENST00000474432 C10orf53Q8N6V4 93 aa16.08■□□□□ 0.16
COL7A1-209ENST00000474432 OR4F15Q8NGB8 312 aa16.08■□□□□ 0.16
COL7A1-209ENST00000474432 FAM168AQ92567 244 aa16.08■□□□□ 0.16
COL7A1-209ENST00000474432 ZNF583Q96ND8 569 aa16.08■□□□□ 0.16
COL7A1-209ENST00000474432 MOV10Q9HCE1 1003 aaKnown RBP16.08■□□□□ 0.16
COL7A1-209ENST00000474432 MEPEQ9NQ76 525 aaPredicted RBP16.08■□□□□ 0.16
COL7A1-209ENST00000474432 YAE1D1Q9NRH1 226 aa16.08■□□□□ 0.16
COL7A1-209ENST00000474432 RTTNQ86VV8 2226 aa16.08■□□□□ 0.16
COL7A1-209ENST00000474432 MALRD1Q5VYJ5 2156 aa16.07■□□□□ 0.16
COL7A1-209ENST00000474432 B9A039 149 aa16.07■□□□□ 0.16
COL7A1-209ENST00000474432 C11orf98E9PRG8 122 aa16.07■□□□□ 0.16
COL7A1-209ENST00000474432 CH25HO95992 272 aa16.07■□□□□ 0.16
COL7A1-209ENST00000474432 ADORA3P0DMS8 318 aa16.07■□□□□ 0.16
COL7A1-209ENST00000474432 BMP4P12644 408 aa16.07■□□□□ 0.16
COL7A1-209ENST00000474432 IFNGR1P15260 489 aa16.07■□□□□ 0.16
COL7A1-209ENST00000474432 SLC25A16P16260 332 aa16.07■□□□□ 0.16
COL7A1-209ENST00000474432 TNFRSF1BP20333 461 aa16.07■□□□□ 0.16
COL7A1-209ENST00000474432 AHCYP23526 432 aa16.07■□□□□ 0.16
COL7A1-209ENST00000474432 CYLC2Q14093 348 aaPredicted RBP16.07■□□□□ 0.16
COL7A1-209ENST00000474432 MSMPQ1L6U9 139 aa16.07■□□□□ 0.16
COL7A1-209ENST00000474432 COQ5Q5HYK3 327 aa16.07■□□□□ 0.16
COL7A1-209ENST00000474432 INTS11Q5TA45 600 aaKnown RBP16.07■□□□□ 0.16
COL7A1-209ENST00000474432 REP15Q6BDI9 236 aa16.07■□□□□ 0.16
COL7A1-209ENST00000474432 VHLLQ6RSH7 139 aa16.07■□□□□ 0.16
COL7A1-209ENST00000474432 SLC46A3Q7Z3Q1 461 aa16.07■□□□□ 0.16
COL7A1-209ENST00000474432 CCDC36Q8IYA8 594 aa16.07■□□□□ 0.16
COL7A1-209ENST00000474432 ANKS4BQ8N8V4 417 aa16.07■□□□□ 0.16
COL7A1-209ENST00000474432 OR8J3Q8NGG0 315 aa16.07■□□□□ 0.16
COL7A1-209ENST00000474432 TMEM54Q969K7 222 aa16.07■□□□□ 0.16
COL7A1-209ENST00000474432 MS4A3Q96HJ5 214 aa16.07■□□□□ 0.16
COL7A1-209ENST00000474432 DOK1Q99704 481 aa16.07■□□□□ 0.16
COL7A1-209ENST00000474432 KCNS3Q9BQ31 491 aa16.07■□□□□ 0.16
COL7A1-209ENST00000474432 ZNF442Q9H7R0 627 aa16.07■□□□□ 0.16
COL7A1-209ENST00000474432 SERPINI2O75830 405 aa16.06■□□□□ 0.16
COL7A1-209ENST00000474432 TP53P04637 393 aaPredicted RBP16.06■□□□□ 0.16
COL7A1-209ENST00000474432 ASAH2BP0C7U1 165 aa16.06■□□□□ 0.16
COL7A1-209ENST00000474432 ZNF14P17017 642 aaPredicted RBP16.06■□□□□ 0.16
COL7A1-209ENST00000474432 ARFIP2P53365 341 aa16.06■□□□□ 0.16
COL7A1-209ENST00000474432 BIDP55957 195 aa16.06■□□□□ 0.16
COL7A1-209ENST00000474432 VLDLRP98155 873 aa16.06■□□□□ 0.16
COL7A1-209ENST00000474432 NPRL3Q12980 569 aa16.06■□□□□ 0.16
COL7A1-209ENST00000474432 TTC33Q6PID6 262 aaPredicted RBP16.06■□□□□ 0.16
COL7A1-209ENST00000474432 ZNF813Q6ZN06 617 aa16.06■□□□□ 0.16
COL7A1-209ENST00000474432 HIPK1Q86Z02 1210 aa16.06■□□□□ 0.16
COL7A1-209ENST00000474432 FGFBP3Q8TAT2 258 aa16.06■□□□□ 0.16
COL7A1-209ENST00000474432 PROX1Q92786 737 aa16.06■□□□□ 0.16
COL7A1-209ENST00000474432 MPP4Q96JB8 637 aa16.06■□□□□ 0.16
COL7A1-209ENST00000474432 CUBNO60494 3623 aa16.06■□□□□ 0.16
COL7A1-209ENST00000474432 ZNF726A6NNF4 738 aa16.05■□□□□ 0.16
COL7A1-209ENST00000474432 KPNA4O00629 521 aaPredicted RBP16.05■□□□□ 0.16
COL7A1-209ENST00000474432 MRASO14807 208 aa16.05■□□□□ 0.16
COL7A1-209ENST00000474432 ZNF35P13682 527 aa16.05■□□□□ 0.16
COL7A1-209ENST00000474432 B4GALT1P15291 398 aa16.05■□□□□ 0.16
COL7A1-209ENST00000474432 SNRPD2P62316 118 aaKnown RBP16.05■□□□□ 0.16
COL7A1-209ENST00000474432 C6orf52Q5T4I8 152 aa16.05■□□□□ 0.16
COL7A1-209ENST00000474432 LRFN4Q6PJG9 635 aa16.05■□□□□ 0.16
COL7A1-209ENST00000474432 SLC35D2Q76EJ3 337 aa16.05■□□□□ 0.16
COL7A1-209ENST00000474432 CARM1Q86X55 608 aa16.05■□□□□ 0.16
COL7A1-209ENST00000474432 SNX32Q86XE0 403 aa16.05■□□□□ 0.16
COL7A1-209ENST00000474432 NKAIN4Q8IVV8 208 aa16.05■□□□□ 0.16
COL7A1-209ENST00000474432 OR6N1Q8NGY5 312 aa16.05■□□□□ 0.16
COL7A1-209ENST00000474432 OR6X1Q8NH79 312 aa16.05■□□□□ 0.16
COL7A1-209ENST00000474432 C10orf82Q8WW14 230 aa16.05■□□□□ 0.16
COL7A1-209ENST00000474432 FOXB1Q99853 325 aa16.05■□□□□ 0.16
COL7A1-209ENST00000474432 ULBP2Q9BZM5 246 aa16.05■□□□□ 0.16
COL7A1-209ENST00000474432 SLC19A3Q9BZV2 496 aa16.05■□□□□ 0.16
COL7A1-209ENST00000474432 ZNF229Q9UJW7 825 aa16.05■□□□□ 0.16
COL7A1-209ENST00000474432 SH3GLB1Q9Y371 365 aa16.05■□□□□ 0.16
COL7A1-209ENST00000474432 LOC100653049A0A140TA62 436 aa16.04■□□□□ 0.16
COL7A1-209ENST00000474432 A8MV72 311 aaPredicted RBP16.04■□□□□ 0.16
COL7A1-209ENST00000474432 SHOX2O60902 331 aaPredicted RBP16.04■□□□□ 0.16
COL7A1-209ENST00000474432 KRT34O76011 436 aa16.04■□□□□ 0.16
COL7A1-209ENST00000474432 NPPAP01160 153 aa16.04■□□□□ 0.16
COL7A1-209ENST00000474432 CSF3P09919 207 aa16.04■□□□□ 0.16
COL7A1-209ENST00000474432 TROVE2P10155 538 aaKnown RBP eCLIP16.04■□□□□ 0.16
COL7A1-209ENST00000474432 CAPZA2P47755 286 aa16.04■□□□□ 0.16
COL7A1-209ENST00000474432 CSNK1A1P48729 337 aa16.04■□□□□ 0.16
COL7A1-209ENST00000474432 PPOXP50336 477 aa16.04■□□□□ 0.16
COL7A1-209ENST00000474432 UGT2B15P54855 530 aa16.04■□□□□ 0.16
COL7A1-209ENST00000474432 PIGFQ07326 219 aa16.04■□□□□ 0.16
COL7A1-209ENST00000474432 GSG1Q2KHT4 349 aa16.04■□□□□ 0.16
COL7A1-209ENST00000474432 ZCCHC24Q8N2G6 241 aaKnown RBP16.04■□□□□ 0.16
COL7A1-209ENST00000474432 SLC26A7Q8TE54 656 aa16.04■□□□□ 0.16
COL7A1-209ENST00000474432 RASSF5Q8WWW0 418 aa16.04■□□□□ 0.16
COL7A1-209ENST00000474432 SH3GL1Q99961 368 aa16.04■□□□□ 0.16
COL7A1-209ENST00000474432 ECSITQ9BQ95 431 aa16.04■□□□□ 0.16
COL7A1-209ENST00000474432 B3GAT2Q9NPZ5 323 aa16.04■□□□□ 0.16
COL7A1-209ENST00000474432 NANSQ9NR45 359 aa16.04■□□□□ 0.16
COL7A1-209ENST00000474432 GMPR2Q9P2T1 348 aaKnown RBP16.04■□□□□ 0.16
COL7A1-209ENST00000474432 POFUT2Q9Y2G5 429 aa16.04■□□□□ 0.16
COL7A1-209ENST00000474432 MXRA5Q9NR99 2828 aa16.04■□□□□ 0.16
COL7A1-209ENST00000474432 BBIP1A8MTZ0 92 aa16.03■□□□□ 0.16
COL7A1-209ENST00000474432 hCG_2039718K7EN88 272 aa16.03■□□□□ 0.16
COL7A1-209ENST00000474432 TSPAN19P0C672 248 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms