RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	FBN3	Q75N90	2809 aa		10.08	□□□□□ -0.8
CPNE1-222	ENST00000473373	TRIM64	A6NGJ6	449 aa		10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	TRIM64B	A6NI03	449 aa		10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	ZNF99	A8MXY4	864 aa	Predicted RBP	10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	ENTPD5	O75356	428 aa		10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	RAB36	O95755	333 aa		10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	SERPINA1	P01009	418 aa		10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	MT-ND1	P03886	318 aa		10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	SAG	P10523	405 aa	Predicted RBP	10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	FUT1	P19526	365 aa		10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	TTK	P33981	857 aa		10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	RBM34	P42696	430 aa	Known RBP	10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	IDH3G	P51553	393 aa	Predicted RBP	10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	GYS2	P54840	703 aa		10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	PSME3	P61289	254 aa		10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	RAB35	Q15286	201 aa		10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	CLEC12B	Q2HXU8	276 aa		10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	PGGHG	Q32M88	737 aa		10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	IFI44L	Q53G44	452 aa		10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	SEZ6L2	Q6UXD5	910 aa		10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	LINGO2	Q7L985	606 aa		10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	HDDC2	Q7Z4H3	204 aa		10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	BIVM	Q86UB2	503 aa		10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	NKAIN4	Q8IVV8	208 aa		10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	SLC15A3	Q8IY34	581 aa		10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	CDK20	Q8IZL9	346 aa		10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	LRRC17	Q8N6Y2	441 aa		10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	PFN4	Q8NHR9	129 aa		10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	GEMIN6	Q8WXD5	167 aa	Known RBP	10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	BCL2L2	Q92843	193 aa	Predicted RBP	10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	ZNF566	Q969W8	418 aa		10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	FBXO17	Q96EF6	278 aa		10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	PRRC1	Q96M27	445 aa		10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	TRAF4	Q9BUZ4	470 aa	Predicted RBP	10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	CACNG6	Q9BXT2	260 aa		10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	PCDHAC1	Q9H158	963 aa		10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	RNF121	Q9H920	327 aa		10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	BARX1	Q9HBU1	254 aa	Predicted RBP	10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	RPS6KA6	Q9UK32	745 aa		10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	FAM32A	Q9Y421	112 aa	Known RBP	10.07	□□□□□ -0.8
CPNE1-222	ENST00000473373	ARPC4-TTLL3	A0A0A6YYG9	625 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	LOC102725191	A0A1B0GVB3	256 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373		E7EQL1	145 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	NME4	O00746	187 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	SSX4	O60224	188 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	SNX3	O60493	162 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	DCTN3	O75935	186 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	OR7A10	O76100	309 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	ZNF432	O94892	652 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	FARS2	O95363	451 aa	Known RBP	10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	IGHG1	P01857	330 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	F13B	P05160	661 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	DANCR	P0C864	163 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	IFI30	P13284	250 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	HOXB1	P14653	301 aa	Predicted RBP	10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	B4GALT1	P15291	398 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	NCK1	P16333	377 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	TCN1	P20061	433 aa	Predicted RBP	10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	APOBEC3A	P31941	199 aa	Predicted RBP	10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	GSK3B	P49841	420 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	DAP3	P51398	398 aa	Known RBP	10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	ZNF84	P51523	738 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	UGT2B15	P54855	530 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	PIGF	Q07326	219 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	ETFDH	Q16134	617 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	ZNF544	Q6NX49	715 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	LINC00114	Q6XXX2	140 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	VTCN1	Q7Z7D3	282 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	TREML1	Q86YW5	311 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	CCDC36	Q8IYA8	594 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	C20orf196	Q8IYI0	205 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	TMEM123	Q8N131	208 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	LRR1	Q96L50	414 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	FOXB1	Q99853	325 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	NDEL1	Q9GZM8	345 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	SPAG4	Q9NPE6	437 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	INIP	Q9NRY2	104 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	ZNF701	Q9NV72	531 aa	Predicted RBP	10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	RHCG	Q9UBD6	479 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	EGFL7	Q9UHF1	273 aa		10.06	□□□□□ -0.8
CPNE1-222	ENST00000473373	ARFGEF3	Q5TH69	2177 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	IGHV1-18	A0A0C4DH31	117 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	RPL36A-HNRNPH2	H7BZ11	118 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	THY1	P04216	161 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	CECR9	P0C854	216 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	THRB	P10828	461 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	DRD4	P21917	467 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	PRDX6	P30041	224 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	ARR3	P36575	388 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	ACVR1B	P36896	505 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	PTDSS1	P48651	473 aa	Known RBP	10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	CRYBA2	P53672	197 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	SNRPD2	P62316	118 aa	Known RBP	10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	GALK2	Q01415	458 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	RPL18	Q07020	188 aa	Known RBP	10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	CD47	Q08722	323 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	TOP3A	Q13472	1001 aa	Predicted RBP	10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	KRT72	Q14CN4	511 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	TRAM2	Q15035	370 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	TAF11	Q15544	211 aa		10.05	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms