RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 TRBV5-3A0A0A0MS03 114 aa13.86□□□□□ -0.19
COL7A1-204ENST00000462475 M0R233 179 aa13.86□□□□□ -0.19
COL7A1-204ENST00000462475 HAX1O00165 279 aa13.86□□□□□ -0.19
COL7A1-204ENST00000462475 SYNGR3O43761 229 aa13.86□□□□□ -0.19
COL7A1-204ENST00000462475 SERPINI2O75830 405 aa13.86□□□□□ -0.19
COL7A1-204ENST00000462475 ZNF35P13682 527 aa13.86□□□□□ -0.19
COL7A1-204ENST00000462475 PTDSS1P48651 473 aaKnown RBP13.86□□□□□ -0.19
COL7A1-204ENST00000462475 PUDPQ08623 228 aa13.86□□□□□ -0.19
COL7A1-204ENST00000462475 PMS2P3Q13401 168 aa13.86□□□□□ -0.19
COL7A1-204ENST00000462475 CAMK2DQ13557 499 aa13.86□□□□□ -0.19
COL7A1-204ENST00000462475 BLOC1S3Q6QNY0 202 aa13.86□□□□□ -0.19
COL7A1-204ENST00000462475 SPDL1Q96EA4 605 aa13.86□□□□□ -0.19
COL7A1-204ENST00000462475 LRR1Q96L50 414 aa13.86□□□□□ -0.19
COL7A1-204ENST00000462475 EPYCQ99645 322 aa13.86□□□□□ -0.19
COL7A1-204ENST00000462475 SYT3Q9BQG1 590 aa13.86□□□□□ -0.19
COL7A1-204ENST00000462475 EBF4Q9BQW3 602 aa13.86□□□□□ -0.19
COL7A1-204ENST00000462475 TMEM27Q9HBJ8 222 aa13.86□□□□□ -0.19
COL7A1-204ENST00000462475 B3GAT2Q9NPZ5 323 aa13.86□□□□□ -0.19
COL7A1-204ENST00000462475 SLC52A3Q9NQ40 469 aa13.86□□□□□ -0.19
COL7A1-204ENST00000462475 MRPL39Q9NYK5 338 aaKnown RBP13.86□□□□□ -0.19
COL7A1-204ENST00000462475 SELENONQ9NZV5 590 aa13.86□□□□□ -0.19
COL7A1-204ENST00000462475 CCDC167Q9P0B6 97 aa13.86□□□□□ -0.19
COL7A1-204ENST00000462475 TMEFF2Q9UIK5 374 aaPredicted RBP13.86□□□□□ -0.19
COL7A1-204ENST00000462475 POFUT2Q9Y2G5 429 aa13.86□□□□□ -0.19
COL7A1-204ENST00000462475 NOX1Q9Y5S8 564 aa13.86□□□□□ -0.19
COL7A1-204ENST00000462475 PRORSD1PA6NEY8 169 aa13.85□□□□□ -0.19
COL7A1-204ENST00000462475 POLR3GO15318 223 aaPredicted RBP13.85□□□□□ -0.19
COL7A1-204ENST00000462475 TCN1P20061 433 aaPredicted RBP13.85□□□□□ -0.19
COL7A1-204ENST00000462475 SRP14P37108 136 aaKnown RBP13.85□□□□□ -0.19
COL7A1-204ENST00000462475 ALDH3B1P43353 468 aa13.85□□□□□ -0.19
COL7A1-204ENST00000462475 GIPRP48546 466 aa13.85□□□□□ -0.19
COL7A1-204ENST00000462475 IDH3AP50213 366 aa13.85□□□□□ -0.19
COL7A1-204ENST00000462475 CDH12P55289 794 aa13.85□□□□□ -0.19
COL7A1-204ENST00000462475 ELFN2Q5R3F8 820 aa13.85□□□□□ -0.19
COL7A1-204ENST00000462475 LIPNQ5VXI9 398 aa13.85□□□□□ -0.19
COL7A1-204ENST00000462475 LRP11Q86VZ4 500 aa13.85□□□□□ -0.19
COL7A1-204ENST00000462475 CARM1Q86X55 608 aa13.85□□□□□ -0.19
COL7A1-204ENST00000462475 C10orf53Q8N6V4 93 aa13.85□□□□□ -0.19
COL7A1-204ENST00000462475 OR6N1Q8NGY5 312 aa13.85□□□□□ -0.19
COL7A1-204ENST00000462475 FOXB1Q99853 325 aa13.85□□□□□ -0.19
COL7A1-204ENST00000462475 TMEM38AQ9H6F2 299 aa13.85□□□□□ -0.19
COL7A1-204ENST00000462475 TMBIM4Q9HC24 238 aa13.85□□□□□ -0.19
COL7A1-204ENST00000462475 MYEF2Q9P2K5 600 aaKnown RBP13.85□□□□□ -0.19
COL7A1-204ENST00000462475 REV1Q9UBZ9 1251 aa13.85□□□□□ -0.19
COL7A1-204ENST00000462475 SLC13A4Q9UKG4 626 aa13.85□□□□□ -0.19
COL7A1-204ENST00000462475 FZR1Q9UM11 496 aa13.85□□□□□ -0.19
COL7A1-204ENST00000462475 GMEB1Q9Y692 573 aa13.85□□□□□ -0.19
COL7A1-204ENST00000462475 ZNF726A6NNF4 738 aa13.84□□□□□ -0.19
COL7A1-204ENST00000462475 PLPP3O14495 311 aa13.84□□□□□ -0.19
COL7A1-204ENST00000462475 TCF21O43680 179 aa13.84□□□□□ -0.19
COL7A1-204ENST00000462475 HPXP02790 462 aa13.84□□□□□ -0.19
COL7A1-204ENST00000462475 C8BP07358 591 aa13.84□□□□□ -0.19
COL7A1-204ENST00000462475 ITGA2P17301 1181 aa13.84□□□□□ -0.19
COL7A1-204ENST00000462475 PPIBP23284 216 aaKnown RBP13.84□□□□□ -0.19
COL7A1-204ENST00000462475 AHCYP23526 432 aa13.84□□□□□ -0.19
COL7A1-204ENST00000462475 SLC6A2P23975 617 aa13.84□□□□□ -0.19
COL7A1-204ENST00000462475 GLRXP35754 106 aa13.84□□□□□ -0.19
COL7A1-204ENST00000462475 CSNK1A1P48729 337 aa13.84□□□□□ -0.19
COL7A1-204ENST00000462475 EVX1P49640 407 aa13.84□□□□□ -0.19
COL7A1-204ENST00000462475 SEC24CP53992 1094 aa13.84□□□□□ -0.19
COL7A1-204ENST00000462475 MAD2L1BPQ15013 274 aaPredicted RBP13.84□□□□□ -0.19
COL7A1-204ENST00000462475 FXNQ16595 210 aa13.84□□□□□ -0.19
COL7A1-204ENST00000462475 TRMT5Q32P41 509 aaKnown RBP13.84□□□□□ -0.19
COL7A1-204ENST00000462475 RINLQ6ZS11 566 aa13.84□□□□□ -0.19
COL7A1-204ENST00000462475 PXKQ7Z7A4 578 aa13.84□□□□□ -0.19
COL7A1-204ENST00000462475 ARMC8Q8IUR7 673 aa13.84□□□□□ -0.19
COL7A1-204ENST00000462475 RFLNBQ8N5W9 214 aa13.84□□□□□ -0.19
COL7A1-204ENST00000462475 SMYD1Q8NB12 490 aa13.84□□□□□ -0.19
COL7A1-204ENST00000462475 C7orf26Q96N11 449 aa13.84□□□□□ -0.19
COL7A1-204ENST00000462475 TMEM43Q9BTV4 400 aa13.84□□□□□ -0.19
COL7A1-204ENST00000462475 NARFLQ9H6Q4 476 aa13.84□□□□□ -0.19
COL7A1-204ENST00000462475 SLCO1B3Q9NPD5 702 aa13.84□□□□□ -0.19
COL7A1-204ENST00000462475 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.84□□□□□ -0.19
COL7A1-204ENST00000462475 SPEF1Q9Y4P9 236 aa13.84□□□□□ -0.19
COL7A1-204ENST00000462475 C11orf98E9PRG8 122 aa13.83□□□□□ -0.2
COL7A1-204ENST00000462475 M0R3H8 397 aa13.83□□□□□ -0.2
COL7A1-204ENST00000462475 MFN2O95140 757 aa13.83□□□□□ -0.2
COL7A1-204ENST00000462475 RAB36O95755 333 aa13.83□□□□□ -0.2
COL7A1-204ENST00000462475 PATE4P0C8F1 98 aa13.83□□□□□ -0.2
COL7A1-204ENST00000462475 GPX2P18283 190 aa13.83□□□□□ -0.2
COL7A1-204ENST00000462475 DVL1P1P54792 670 aaPredicted RBP13.83□□□□□ -0.2
COL7A1-204ENST00000462475 BIDP55957 195 aa13.83□□□□□ -0.2
COL7A1-204ENST00000462475 RAB1AP62820 205 aa13.83□□□□□ -0.2
COL7A1-204ENST00000462475 RAB39AQ14964 217 aa13.83□□□□□ -0.2
COL7A1-204ENST00000462475 SWT1Q5T5J6 900 aaKnown RBP13.83□□□□□ -0.2
COL7A1-204ENST00000462475 GKAP1Q5VSY0 366 aaPredicted RBP13.83□□□□□ -0.2
COL7A1-204ENST00000462475 RANBP3LQ86VV4 465 aaPredicted RBP13.83□□□□□ -0.2
COL7A1-204ENST00000462475 ZNF584Q8IVC4 421 aa13.83□□□□□ -0.2
COL7A1-204ENST00000462475 HIPK4Q8NE63 616 aa13.83□□□□□ -0.2
COL7A1-204ENST00000462475 OR5J2Q8NH18 312 aa13.83□□□□□ -0.2
COL7A1-204ENST00000462475 CLDND2Q8NHS1 167 aa13.83□□□□□ -0.2
COL7A1-204ENST00000462475 FGFBP3Q8TAT2 258 aa13.83□□□□□ -0.2
COL7A1-204ENST00000462475 ZNF607Q96SK3 696 aa13.83□□□□□ -0.2
COL7A1-204ENST00000462475 CPPED1Q9BRF8 314 aaPredicted RBP13.83□□□□□ -0.2
COL7A1-204ENST00000462475 SERPINB7O75635 380 aa13.82□□□□□ -0.2
COL7A1-204ENST00000462475 NCR1O76036 304 aa13.82□□□□□ -0.2
COL7A1-204ENST00000462475 UBL3O95164 117 aa13.82□□□□□ -0.2
COL7A1-204ENST00000462475 TGDSO95455 350 aa13.82□□□□□ -0.2
COL7A1-204ENST00000462475 OPN1SWP03999 348 aa13.82□□□□□ -0.2
COL7A1-204ENST00000462475 ADORA3P0DMS8 318 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms