RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 FBN1P35555 2871 aaKnown RBP6.36□□□□□ -1.39
USP54-208ENST00000461520 AGAP5A6NIR3 686 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 OR5H1A6NKK0 313 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 H3BUI4 141 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 FAAHO00519 579 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 ZNF208O43345 1280 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 BCAS1O75363 584 aaPredicted RBP6.36□□□□□ -1.39
USP54-208ENST00000461520 MRPL33O75394 65 aaKnown RBP6.36□□□□□ -1.39
USP54-208ENST00000461520 ALDOCP09972 364 aaKnown RBP6.36□□□□□ -1.39
USP54-208ENST00000461520 UQCRBP14927 111 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 NDUFB7P17568 137 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 BGNP21810 368 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 EDNRAP25101 427 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 RYKP34925 604 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 CDKN1AP38936 164 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 MAGEA8P43361 318 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 ZNF81P51508 661 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 H3F3AP84243 136 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 VEZF1Q14119 521 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 GNA13Q14344 377 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 OR7E24Q6IFN5 339 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 ZNF782Q6ZMW2 699 aaPredicted RBP6.36□□□□□ -1.39
USP54-208ENST00000461520 LRRC74BQ6ZQY2 392 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 SPATA19Q7Z5L4 167 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 CROCCP2Q86T23 111 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 DTX2Q86UW9 622 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 UBE2J2Q8N2K1 259 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 ZNF433Q8N7K0 673 aaPredicted RBP6.36□□□□□ -1.39
USP54-208ENST00000461520 KBTBD8Q8NFY9 601 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 NEUROG1Q92886 237 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 APH1AQ96BI3 265 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 DDIT4LQ96D03 193 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 ARL5BQ96KC2 179 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 PANX1Q96RD7 426 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 TRAF4Q9BUZ4 470 aaPredicted RBP6.36□□□□□ -1.39
USP54-208ENST00000461520 PARD6BQ9BYG5 372 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 SLC38A1Q9H2H9 487 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 KCNK9Q9NPC2 374 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 TAS2R16Q9NYV7 291 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 CISD1Q9NZ45 108 aaKnown RBP6.36□□□□□ -1.39
USP54-208ENST00000461520 TMEM181Q9P2C4 612 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 MALT1Q9UDY8 824 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 MGAT4BQ9UQ53 548 aa6.36□□□□□ -1.39
USP54-208ENST00000461520 TMED7-TICAM2A0A0A6YYA0 188 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 CIB4A0PJX0 185 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 CLDN24A6NM45 220 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 SHISA9B4DS77 424 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 SDHDO14521 159 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 ABCD4O14678 606 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 HDAC3O15379 428 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 EIF1BO60739 113 aaKnown RBP6.35□□□□□ -1.39
USP54-208ENST00000461520 RAMP1O60894 148 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 RAD51DO75771 328 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 KRT75O95678 551 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 CD8AP01732 235 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 IL7RP16871 459 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 RPS4Y1P22090 263 aaKnown RBP6.35□□□□□ -1.39
USP54-208ENST00000461520 PTAFRP25105 342 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 SLC1A3P43003 542 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 IDH2P48735 452 aaKnown RBP6.35□□□□□ -1.39
USP54-208ENST00000461520 POLR2HP52434 150 aaKnown RBP6.35□□□□□ -1.39
USP54-208ENST00000461520 CDH11P55287 796 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 OR2B6P58173 313 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 UFM1P61960 85 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 SLC35A1P78382 337 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 BST1Q10588 318 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 GABRA6Q16445 453 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 SYPL1Q16563 259 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 SRSF7Q16629 238 aaKnown RBP eCLIP6.35□□□□□ -1.39
USP54-208ENST00000461520 NRF1Q16656 503 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 CEP85LQ5SZL2 805 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 C1QTNF12Q5T7M4 302 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 AGAP6Q5VW22 663 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 KLHL17Q6TDP4 642 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 DNM1P46Q6ZS02 220 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 ZNF621Q6ZSS3 439 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 RNF130Q86XS8 419 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 ANKFN1Q8N957 763 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 SEMA6DQ8NFY4 1073 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 WDR60Q8WVS4 1066 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 CNOT9Q92600 299 aaKnown RBP6.35□□□□□ -1.39
USP54-208ENST00000461520 TEX37Q96LM6 180 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 MUS81Q96NY9 551 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 OR52E6Q96RD3 313 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 ZBTB18Q99592 522 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 PAIP2Q9BPZ3 127 aaKnown RBP6.35□□□□□ -1.39
USP54-208ENST00000461520 NAA11Q9BSU3 229 aaPredicted RBP6.35□□□□□ -1.39
USP54-208ENST00000461520 REG4Q9BYZ8 158 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 OR11A1Q9GZK7 315 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 SLCO5A1Q9H2Y9 848 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 CENPHQ9H3R5 247 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 MTHFD2LQ9H903 347 aaPredicted RBP6.35□□□□□ -1.39
USP54-208ENST00000461520 AIG1Q9NVV5 245 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 THAP1Q9NVV9 213 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 NPAP1Q9NZP6 1156 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.35□□□□□ -1.39
USP54-208ENST00000461520 OSGIN1Q9UJX0 560 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 RAB21Q9UL25 225 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 TMED7Q9Y3B3 224 aa6.35□□□□□ -1.39
USP54-208ENST00000461520 SLC25A15Q9Y619 301 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms