RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 CTAG2O75638 210 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 RAB40ALP0C0E4 278 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 DUX4L2P0CJ85 424 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 DUX4L3P0CJ86 424 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 DUX4L4P0CJ87 422 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 DUX4L5P0CJ88 424 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 DUX4L6P0CJ89 424 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 DUX4L7P0CJ90 424 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 HOXB1P14653 301 aaPredicted RBP10.67□□□□□ -0.7
CPSF3-202ENST00000460593 FAUP35544 74 aaKnown RBP10.67□□□□□ -0.7
CPSF3-202ENST00000460593 PRDX1Q06830 199 aaKnown RBP10.67□□□□□ -0.7
CPSF3-202ENST00000460593 ZNF234Q14588 700 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 CCDC157Q569K6 752 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 AVPI1Q5T686 147 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 TMEM200AQ86VY9 491 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 KCNRGQ8N5I3 272 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 OR4S1Q8NGB4 309 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 OR4A4PQ8NGN8 299 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 CASTOR1Q8WTX7 329 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 TMED6Q8WW62 240 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 RAB40AQ8WXH6 277 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 TRIM43Q96BQ3 446 aaPredicted RBP10.67□□□□□ -0.7
CPSF3-202ENST00000460593 INSM2Q96T92 566 aaPredicted RBP10.67□□□□□ -0.7
CPSF3-202ENST00000460593 SELENOIQ9C0D9 397 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 PIGMQ9H3S5 423 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 FRRS1LQ9P0K9 344 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 DUX4Q9UBX2 424 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 TNFSF18Q9UNG2 199 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 OR14I1A6ND48 311 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 TTLL8A6PVC2 850 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 GRXCR1A8MXD5 290 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 TXNL1O43396 289 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 SULT1B1O43704 296 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 IFNGP01579 166 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 AMY2AP04746 511 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 AKAIN1P0CW23 69 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 SELPP16109 830 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 EMDP50402 254 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 ZNF157P51786 506 aaPredicted RBP10.67□□□□□ -0.7
CPSF3-202ENST00000460593 SLC7A9P82251 487 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 SRSF5Q13243 272 aaKnown RBP10.67□□□□□ -0.7
CPSF3-202ENST00000460593 DCST2Q5T1A1 773 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 PRAMEF8Q5VWM4 474 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 PRAMEF7Q5VXH5 474 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 FAM109BQ6ICB4 259 aaPredicted RBP10.67□□□□□ -0.7
CPSF3-202ENST00000460593 OR10K2Q6IF99 312 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 ZNF627Q7L945 461 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 SLC29A4Q7RTT9 530 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 CD163Q86VB7 1156 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 SPAG16Q8N0X2 631 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 OR4K14Q8NGD5 310 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 NUBPLQ8TB37 319 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 HAO2Q9NYQ3 351 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 IKZF2Q9UKS7 526 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 ICAM5Q9UMF0 924 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 GTF2A1LQ9UNN4 478 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 KIAA1549LQ6ZVL6 1849 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 A0A0B4J2A0 478 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 PQLC2LA1A4F0 135 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 LRRC72A6NJI9 287 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 SOD2P04179 222 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 SLC35G4P0C7Q5 338 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 CPMP14384 443 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 SPI1P17947 270 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 POU3F4P49335 361 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 ARFIP1P53367 373 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 DHRS2Q13268 280 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 TCEAL5Q5H9L2 206 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 LIPNQ5VXI9 398 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 C11orf87Q6NUJ2 197 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 KCTD9Q7L273 389 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 CCDC36Q8IYA8 594 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 SYS1Q8N2H4 156 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 ZSCAN1Q8NBB4 408 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 TMEM106AQ96A25 262 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 EPHX3Q9H6B9 360 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 CHRNA9Q9UGM1 479 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 SHPKQ9UHJ6 478 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 TINAGQ9UJW2 476 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 EML5Q05BV3 1969 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 XRCC3O43542 346 aa10.66□□□□□ -0.7
CPSF3-202ENST00000460593 HLA-AP01891 365 aaKnown RBP10.66□□□□□ -0.7
CPSF3-202ENST00000460593 CD34P28906 385 aa10.66□□□□□ -0.7
CPSF3-202ENST00000460593 SLC6A6P31641 620 aa10.66□□□□□ -0.7
CPSF3-202ENST00000460593 CASRP41180 1078 aa10.66□□□□□ -0.7
CPSF3-202ENST00000460593 HAAOP46952 286 aa10.66□□□□□ -0.7
CPSF3-202ENST00000460593 PPT1P50897 306 aa10.66□□□□□ -0.7
CPSF3-202ENST00000460593 S100A12P80511 92 aa10.66□□□□□ -0.7
CPSF3-202ENST00000460593 HABP2Q14520 560 aaPredicted RBP10.66□□□□□ -0.7
CPSF3-202ENST00000460593 ARHGAP40Q5TG30 622 aa10.66□□□□□ -0.7
CPSF3-202ENST00000460593 LRRC69Q6ZNQ3 347 aa10.66□□□□□ -0.7
CPSF3-202ENST00000460593 GABRG1Q8N1C3 465 aa10.66□□□□□ -0.7
CPSF3-202ENST00000460593 EID2Q8N6I1 236 aa10.66□□□□□ -0.7
CPSF3-202ENST00000460593 COX18Q8N8Q8 333 aa10.66□□□□□ -0.7
CPSF3-202ENST00000460593 PLPP7Q8NBV4 271 aa10.66□□□□□ -0.7
CPSF3-202ENST00000460593 RSRP1Q9BUV0 290 aa10.66□□□□□ -0.7
CPSF3-202ENST00000460593 ATG5Q9H1Y0 275 aa10.66□□□□□ -0.7
CPSF3-202ENST00000460593 HRH4Q9H3N8 390 aa10.66□□□□□ -0.7
CPSF3-202ENST00000460593 GAREM1Q9H706 876 aa10.66□□□□□ -0.7
CPSF3-202ENST00000460593 SRA1Q9HD15 236 aaKnown RBP10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms