RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 ZNF100Q8IYN0 542 aa14□□□□□ -0.17
USP40-206ENST00000443711 GALNT4Q8N4A0 578 aa14□□□□□ -0.17
USP40-206ENST00000443711 ARIH2OSQ8N7S6 290 aa14□□□□□ -0.17
USP40-206ENST00000443711 OR2T33Q8NG76 320 aa14□□□□□ -0.17
USP40-206ENST00000443711 OR6X1Q8NH79 312 aa14□□□□□ -0.17
USP40-206ENST00000443711 ASB10Q8WXI3 467 aa14□□□□□ -0.17
USP40-206ENST00000443711 ERMAPQ96PL5 475 aaPredicted RBP14□□□□□ -0.17
USP40-206ENST00000443711 EMC6Q9BV81 110 aa14□□□□□ -0.17
USP40-206ENST00000443711 VCX3BQ9H321 246 aa14□□□□□ -0.17
USP40-206ENST00000443711 COQ3Q9NZJ6 369 aa14□□□□□ -0.17
USP40-206ENST00000443711 ZNF629Q9UEG4 869 aaPredicted RBP14□□□□□ -0.17
USP40-206ENST00000443711 ERRFI1Q9UJM3 462 aaPredicted RBP14□□□□□ -0.17
USP40-206ENST00000443711 RNF6Q9Y252 685 aa14□□□□□ -0.17
USP40-206ENST00000443711 SLC5A6Q9Y289 635 aa14□□□□□ -0.17
USP40-206ENST00000443711 ADAM18Q9Y3Q7 739 aa14□□□□□ -0.17
USP40-206ENST00000443711 FREM1Q5H8C1 2179 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 SPENQ96T58 3664 aaKnown RBP13.99□□□□□ -0.17
USP40-206ENST00000443711 OR6C65A6NJZ3 312 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 DVL2O14641 736 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 SLC43A1O75387 559 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 TXNDC12O95881 172 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 SDHAP31040 664 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 NTF4P34130 210 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 ACVR1BP36896 505 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 OR3A2P47893 321 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 CDK5Q00535 292 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 NPRL3Q12980 569 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 MELKQ14680 651 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 GINS1Q14691 196 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 ARMC4Q5T2S8 1044 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 SLC27A4Q6P1M0 643 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 VWA1Q6PCB0 445 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 FAM122BQ7Z309 247 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 BTLAQ7Z6A9 289 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 CCDC71Q8IV32 467 aaPredicted RBP13.99□□□□□ -0.17
USP40-206ENST00000443711 LNX2Q8N448 690 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 NRG4Q8WWG1 115 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 ASB5Q8WWX0 329 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 APH1AQ96BI3 265 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 STARD4Q96DR4 205 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 CCDC120Q96HB5 630 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 Q96M85 177 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 ZNF570Q96NI8 536 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 TSPAN32Q96QS1 320 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 OR2M2Q96R28 347 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 TEX12Q9BXU0 123 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 GABARAPL3Q9BY60 117 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 PIGMQ9H3S5 423 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 RIBC2Q9H4K1 309 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 C12orf49Q9H741 205 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 SLC25A19Q9HC21 320 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 PLSCR4Q9NRQ2 329 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 PROCRQ9UNN8 238 aa13.99□□□□□ -0.17
USP40-206ENST00000443711 NCOA6Q14686 2063 aaPredicted RBP13.99□□□□□ -0.17
USP40-206ENST00000443711 BHLHE40O14503 412 aa13.98□□□□□ -0.17
USP40-206ENST00000443711 XKRYO14609 159 aa13.98□□□□□ -0.17
USP40-206ENST00000443711 ZNF432O94892 652 aa13.98□□□□□ -0.17
USP40-206ENST00000443711 CD8BP10966 210 aa13.98□□□□□ -0.17
USP40-206ENST00000443711 PLA2G2AP14555 144 aa13.98□□□□□ -0.17
USP40-206ENST00000443711 ACADSP16219 412 aa13.98□□□□□ -0.17
USP40-206ENST00000443711 NOS3P29474 1203 aa13.98□□□□□ -0.17
USP40-206ENST00000443711 CHRNB4P30926 498 aa13.98□□□□□ -0.17
USP40-206ENST00000443711 GRK5P34947 590 aa13.98□□□□□ -0.17
USP40-206ENST00000443711 SELENOPP49908 381 aa13.98□□□□□ -0.17
USP40-206ENST00000443711 ADORA2A-AS1P86434 159 aa13.98□□□□□ -0.17
USP40-206ENST00000443711 CAMK2DQ13557 499 aa13.98□□□□□ -0.17
USP40-206ENST00000443711 PTGES3Q15185 160 aaKnown RBP13.98□□□□□ -0.17
USP40-206ENST00000443711 PGGHGQ32M88 737 aa13.98□□□□□ -0.17
USP40-206ENST00000443711 ZIK1Q3SY52 487 aaPredicted RBP13.98□□□□□ -0.17
USP40-206ENST00000443711 FBXW10Q5XX13 1052 aa13.98□□□□□ -0.17
USP40-206ENST00000443711 OR4Q3Q8NH05 313 aa13.98□□□□□ -0.17
USP40-206ENST00000443711 ZNF519Q8TB69 540 aa13.98□□□□□ -0.17
USP40-206ENST00000443711 ZNF566Q969W8 418 aa13.98□□□□□ -0.17
USP40-206ENST00000443711 SLC25A44Q96H78 314 aaPredicted RBP13.98□□□□□ -0.17
USP40-206ENST00000443711 RDH12Q96NR8 316 aa13.98□□□□□ -0.17
USP40-206ENST00000443711 RASSF4Q9H2L5 321 aa13.98□□□□□ -0.17
USP40-206ENST00000443711 SMPD3Q9NY59 655 aaPredicted RBP13.98□□□□□ -0.17
USP40-206ENST00000443711 TEX13CA0A0J9YWL9 993 aa13.97□□□□□ -0.17
USP40-206ENST00000443711 CENPBD1B2RD01 187 aa13.97□□□□□ -0.17
USP40-206ENST00000443711 J3QKU1 62 aa13.97□□□□□ -0.17
USP40-206ENST00000443711 ARHGEF9O43307 516 aa13.97□□□□□ -0.17
USP40-206ENST00000443711 SMNDC1O75940 238 aaKnown RBP eCLIP13.97□□□□□ -0.17
USP40-206ENST00000443711 SNAP29O95721 258 aa13.97□□□□□ -0.17
USP40-206ENST00000443711 CGAP01215 116 aa13.97□□□□□ -0.17
USP40-206ENST00000443711 IGHG1P01857 330 aa13.97□□□□□ -0.17
USP40-206ENST00000443711 HMGN1P05114 100 aa13.97□□□□□ -0.17
USP40-206ENST00000443711 BMP5P22003 454 aa13.97□□□□□ -0.17
USP40-206ENST00000443711 POLR2IP36954 125 aaKnown RBP13.97□□□□□ -0.17
USP40-206ENST00000443711 PTDSS1P48651 473 aaKnown RBP13.97□□□□□ -0.17
USP40-206ENST00000443711 MYBPC1Q00872 1141 aa13.97□□□□□ -0.17
USP40-206ENST00000443711 KRR1Q13601 381 aaKnown RBP13.97□□□□□ -0.17
USP40-206ENST00000443711 CARD17Q5XLA6 110 aa13.97□□□□□ -0.17
USP40-206ENST00000443711 TMEM123Q8N131 208 aa13.97□□□□□ -0.17
USP40-206ENST00000443711 IQCF1Q8N6M8 205 aa13.97□□□□□ -0.17
USP40-206ENST00000443711 POMGNT2Q8NAT1 580 aa13.97□□□□□ -0.17
USP40-206ENST00000443711 OR6N1Q8NGY5 312 aa13.97□□□□□ -0.17
USP40-206ENST00000443711 RASD2Q96D21 266 aa13.97□□□□□ -0.17
USP40-206ENST00000443711 LRR1Q96L50 414 aa13.97□□□□□ -0.17
USP40-206ENST00000443711 SLCO5A1Q9H2Y9 848 aa13.97□□□□□ -0.17
USP40-206ENST00000443711 TOR3AQ9H497 397 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms