RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 FAM69AQ5T7M9 428 aa12.25□□□□□ -0.45
HMGN1-208ENST00000443046 NET1Q7Z628 596 aaPredicted RBP12.25□□□□□ -0.45
HMGN1-208ENST00000443046 GSPT2Q8IYD1 628 aaKnown RBP12.25□□□□□ -0.45
HMGN1-208ENST00000443046 LRRC34Q8IZ02 419 aa12.25□□□□□ -0.45
HMGN1-208ENST00000443046 FGFBP3Q8TAT2 258 aa12.25□□□□□ -0.45
HMGN1-208ENST00000443046 SLC35B4Q969S0 331 aa12.25□□□□□ -0.45
HMGN1-208ENST00000443046 PANX1Q96RD7 426 aa12.25□□□□□ -0.45
HMGN1-208ENST00000443046 SPATA9Q9BWV2 254 aa12.25□□□□□ -0.45
HMGN1-208ENST00000443046 SLITRK2Q9H156 845 aa12.25□□□□□ -0.45
HMGN1-208ENST00000443046 C12orf10Q9HB07 376 aa12.25□□□□□ -0.45
HMGN1-208ENST00000443046 TAAR3PQ9P1P4 343 aa12.25□□□□□ -0.45
HMGN1-208ENST00000443046 ARMCX1Q9P291 453 aa12.25□□□□□ -0.45
HMGN1-208ENST00000443046 IGKV1D-42A0A075B6H8 117 aa12.24□□□□□ -0.45
HMGN1-208ENST00000443046 IGHV1-69-2A0A0G2JMI3 117 aa12.24□□□□□ -0.45
HMGN1-208ENST00000443046 ITM2AO43736 263 aa12.24□□□□□ -0.45
HMGN1-208ENST00000443046 UBL3O95164 117 aa12.24□□□□□ -0.45
HMGN1-208ENST00000443046 RAB36O95755 333 aa12.24□□□□□ -0.45
HMGN1-208ENST00000443046 B4GALT1P15291 398 aa12.24□□□□□ -0.45
HMGN1-208ENST00000443046 GTF2E2P29084 291 aaKnown RBP12.24□□□□□ -0.45
HMGN1-208ENST00000443046 IL12AP29459 219 aa12.24□□□□□ -0.45
HMGN1-208ENST00000443046 ETV4P43268 484 aa12.24□□□□□ -0.45
HMGN1-208ENST00000443046 RAB39AQ14964 217 aa12.24□□□□□ -0.45
HMGN1-208ENST00000443046 LARS2Q15031 903 aaKnown RBP12.24□□□□□ -0.45
HMGN1-208ENST00000443046 NKPD1Q17RQ9 610 aa12.24□□□□□ -0.45
HMGN1-208ENST00000443046 ALKBH6Q3KRA9 238 aa12.24□□□□□ -0.45
HMGN1-208ENST00000443046 RGS7BPQ6MZT1 257 aaPredicted RBP12.24□□□□□ -0.45
HMGN1-208ENST00000443046 C5orf46Q6UWT4 87 aa12.24□□□□□ -0.45
HMGN1-208ENST00000443046 ZNF621Q6ZSS3 439 aa12.24□□□□□ -0.45
HMGN1-208ENST00000443046 ZNF781Q8N8C0 355 aa12.24□□□□□ -0.45
HMGN1-208ENST00000443046 PNPT1Q8TCS8 783 aaKnown RBP12.24□□□□□ -0.45
HMGN1-208ENST00000443046 MGARPQ8TDB4 240 aa12.24□□□□□ -0.45
HMGN1-208ENST00000443046 SLC38A5Q8WUX1 472 aa12.24□□□□□ -0.45
HMGN1-208ENST00000443046 UBLCP1Q8WVY7 318 aaPredicted RBP12.24□□□□□ -0.45
HMGN1-208ENST00000443046 PPP1R36Q96LQ0 422 aa12.24□□□□□ -0.45
HMGN1-208ENST00000443046 TSPAN32Q96QS1 320 aa12.24□□□□□ -0.45
HMGN1-208ENST00000443046 FOXB1Q99853 325 aa12.24□□□□□ -0.45
HMGN1-208ENST00000443046 EMC6Q9BV81 110 aa12.24□□□□□ -0.45
HMGN1-208ENST00000443046 CALML5Q9NZT1 146 aa12.24□□□□□ -0.45
HMGN1-208ENST00000443046 P2RX2Q9UBL9 471 aa12.24□□□□□ -0.45
HMGN1-208ENST00000443046 POFUT2Q9Y2G5 429 aa12.24□□□□□ -0.45
HMGN1-208ENST00000443046 KMT2CQ8NEZ4 4911 aaKnown RBP12.23□□□□□ -0.45
HMGN1-208ENST00000443046 SLC22A23A1A5C7 686 aa12.23□□□□□ -0.45
HMGN1-208ENST00000443046 DNAJC9-AS1A6NH13 148 aa12.23□□□□□ -0.45
HMGN1-208ENST00000443046 SPAG7O75391 227 aa12.23□□□□□ -0.45
HMGN1-208ENST00000443046 RNASE1P07998 156 aaKnown RBP12.23□□□□□ -0.45
HMGN1-208ENST00000443046 CRISP3P54108 245 aa12.23□□□□□ -0.45
HMGN1-208ENST00000443046 IL13RA1P78552 427 aa12.23□□□□□ -0.45
HMGN1-208ENST00000443046 HOXC5Q00444 222 aa12.23□□□□□ -0.45
HMGN1-208ENST00000443046 TEKQ02763 1124 aa12.23□□□□□ -0.45
HMGN1-208ENST00000443046 LRRC74AQ0VAA2 488 aa12.23□□□□□ -0.45
HMGN1-208ENST00000443046 CARD17Q5XLA6 110 aa12.23□□□□□ -0.45
HMGN1-208ENST00000443046 TMEM154Q6P9G4 183 aa12.23□□□□□ -0.45
HMGN1-208ENST00000443046 UEVLDQ8IX04 471 aa12.23□□□□□ -0.45
HMGN1-208ENST00000443046 SKA3Q8IX90 412 aa12.23□□□□□ -0.45
HMGN1-208ENST00000443046 PAQR4Q8N4S7 273 aaPredicted RBP12.23□□□□□ -0.45
HMGN1-208ENST00000443046 LSMEM1Q8N8F7 131 aa12.23□□□□□ -0.45
HMGN1-208ENST00000443046 EIF1ADQ8N9N8 165 aaKnown RBP12.23□□□□□ -0.45
HMGN1-208ENST00000443046 OR6S1Q8NH40 331 aa12.23□□□□□ -0.45
HMGN1-208ENST00000443046 ANP32BQ92688 251 aaKnown RBP12.23□□□□□ -0.45
HMGN1-208ENST00000443046 SLC38A4Q969I6 547 aa12.23□□□□□ -0.45
HMGN1-208ENST00000443046 TXNDC15Q96J42 360 aa12.23□□□□□ -0.45
HMGN1-208ENST00000443046 RSPO3Q9BXY4 272 aaPredicted RBP12.23□□□□□ -0.45
HMGN1-208ENST00000443046 SLC6A13Q9NSD5 602 aa12.23□□□□□ -0.45
HMGN1-208ENST00000443046 KLHL14Q9P2G3 628 aa12.23□□□□□ -0.45
HMGN1-208ENST00000443046 GPR160Q9UJ42 338 aa12.23□□□□□ -0.45
HMGN1-208ENST00000443046 ZNF232Q9UNY5 417 aa12.23□□□□□ -0.45
HMGN1-208ENST00000443046 CACNG2Q9Y698 323 aa12.23□□□□□ -0.45
HMGN1-208ENST00000443046 TRAV36DV7A0A075B6V5 113 aa12.22□□□□□ -0.45
HMGN1-208ENST00000443046 A0A087WUJ7 227 aa12.22□□□□□ -0.45
HMGN1-208ENST00000443046 A0A0G2JPF8 293 aa12.22□□□□□ -0.45
HMGN1-208ENST00000443046 HNRNPCL2B2RXH8 293 aa12.22□□□□□ -0.45
HMGN1-208ENST00000443046 HNRNPCL3B7ZW38 293 aa12.22□□□□□ -0.45
HMGN1-208ENST00000443046 CLDN25C9JDP6 229 aa12.22□□□□□ -0.45
HMGN1-208ENST00000443046 CLDN34H7C241 214 aa12.22□□□□□ -0.45
HMGN1-208ENST00000443046 HNRNPCL1O60812 293 aaKnown RBP12.22□□□□□ -0.45
HMGN1-208ENST00000443046 KRT75O95678 551 aa12.22□□□□□ -0.45
HMGN1-208ENST00000443046 BCHEP06276 602 aa12.22□□□□□ -0.45
HMGN1-208ENST00000443046 PATE4P0C8F1 98 aa12.22□□□□□ -0.45
HMGN1-208ENST00000443046 HNRNPCL4P0DMR1 293 aa12.22□□□□□ -0.45
HMGN1-208ENST00000443046 RAD52P43351 418 aa12.22□□□□□ -0.45
HMGN1-208ENST00000443046 KLF3P57682 345 aaPredicted RBP12.22□□□□□ -0.45
HMGN1-208ENST00000443046 UFM1P61960 85 aa12.22□□□□□ -0.45
HMGN1-208ENST00000443046 RPS26P11Q5JNZ5 115 aaPredicted RBP12.22□□□□□ -0.45
HMGN1-208ENST00000443046 KLF17Q5JT82 389 aaPredicted RBP12.22□□□□□ -0.45
HMGN1-208ENST00000443046 OGFOD2Q6N063 350 aa12.22□□□□□ -0.45
HMGN1-208ENST00000443046 RBMS3Q6XE24 437 aaKnown RBP12.22□□□□□ -0.45
HMGN1-208ENST00000443046 PIWIL3Q7Z3Z3 882 aaKnown RBP12.22□□□□□ -0.45
HMGN1-208ENST00000443046 RETREG3Q86VR2 466 aa12.22□□□□□ -0.45
HMGN1-208ENST00000443046 SNX32Q86XE0 403 aa12.22□□□□□ -0.45
HMGN1-208ENST00000443046 DEFB108BQ8NET1 73 aa12.22□□□□□ -0.45
HMGN1-208ENST00000443046 ZNF519Q8TB69 540 aa12.22□□□□□ -0.45
HMGN1-208ENST00000443046 SYNPRQ8TBG9 265 aa12.22□□□□□ -0.45
HMGN1-208ENST00000443046 RAB1CQ92928 201 aa12.22□□□□□ -0.45
HMGN1-208ENST00000443046 POP5Q969H6 163 aaKnown RBP12.22□□□□□ -0.45
HMGN1-208ENST00000443046 ZNF48Q96MX3 618 aaPredicted RBP12.22□□□□□ -0.45
HMGN1-208ENST00000443046 DUX5Q96PT3 197 aa12.22□□□□□ -0.45
HMGN1-208ENST00000443046 OR52E6Q96RD3 313 aa12.22□□□□□ -0.45
HMGN1-208ENST00000443046 RHOXF2Q9BQY4 288 aa12.22□□□□□ -0.45
HMGN1-208ENST00000443046 C20orf27Q9GZN8 174 aa12.22□□□□□ -0.45
HMGN1-208ENST00000443046 ARMC7Q9H6L4 198 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms