RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 H2AFB2P0C5Z0 115 aa12.15□□□□□ -0.46
VPS54-203ENST00000409558 RPS11P62280 158 aaKnown RBP eCLIP12.15□□□□□ -0.46
VPS54-203ENST00000409558 ACTA2P62736 377 aa12.15□□□□□ -0.46
VPS54-203ENST00000409558 ACTG2P63267 376 aa12.15□□□□□ -0.46
VPS54-203ENST00000409558 ANGPT1Q15389 498 aa12.15□□□□□ -0.46
VPS54-203ENST00000409558 MAMSTRQ6ZN01 415 aa12.15□□□□□ -0.46
VPS54-203ENST00000409558 JAGN1Q8N5M9 183 aa12.15□□□□□ -0.46
VPS54-203ENST00000409558 RGP1Q92546 391 aaPredicted RBP12.15□□□□□ -0.46
VPS54-203ENST00000409558 OMA1Q96E52 524 aa12.15□□□□□ -0.46
VPS54-203ENST00000409558 ZDHHC12Q96GR4 267 aa12.15□□□□□ -0.46
VPS54-203ENST00000409558 LCORQ96JN0 433 aaPredicted RBP12.15□□□□□ -0.46
VPS54-203ENST00000409558 LMF2Q9BU23 707 aaKnown RBP12.15□□□□□ -0.46
VPS54-203ENST00000409558 OR51J1Q9H342 316 aa12.15□□□□□ -0.46
VPS54-203ENST00000409558 FRRS1LQ9P0K9 344 aa12.15□□□□□ -0.46
VPS54-203ENST00000409558 MRM2Q9UI43 246 aaKnown RBP12.15□□□□□ -0.46
VPS54-203ENST00000409558 THADAQ6YHU6 1953 aa12.15□□□□□ -0.47
VPS54-203ENST00000409558 HOXC4P09017 264 aaPredicted RBP12.15□□□□□ -0.47
VPS54-203ENST00000409558 SLC2A1P11166 492 aa12.15□□□□□ -0.47
VPS54-203ENST00000409558 STOMP27105 288 aa12.15□□□□□ -0.47
VPS54-203ENST00000409558 UQCRC1P31930 480 aa12.15□□□□□ -0.47
VPS54-203ENST00000409558 MAP3K8P41279 467 aa12.15□□□□□ -0.47
VPS54-203ENST00000409558 OR7A5Q15622 319 aa12.15□□□□□ -0.47
VPS54-203ENST00000409558 LUZP2Q86TE4 346 aa12.15□□□□□ -0.47
VPS54-203ENST00000409558 OR2T35Q8NGX2 323 aa12.15□□□□□ -0.47
VPS54-203ENST00000409558 ACOT12Q8WYK0 555 aa12.15□□□□□ -0.47
VPS54-203ENST00000409558 SEC61A2Q9H9S3 476 aa12.15□□□□□ -0.47
VPS54-203ENST00000409558 ZNF304Q9HCX3 659 aa12.15□□□□□ -0.47
VPS54-203ENST00000409558 TMEM138Q9NPI0 162 aa12.15□□□□□ -0.47
VPS54-203ENST00000409558 RPH3AQ9Y2J0 694 aaPredicted RBP12.15□□□□□ -0.47
VPS54-203ENST00000409558 ZNF281Q9Y2X9 895 aa12.15□□□□□ -0.47
VPS54-203ENST00000409558 V9GY05 133 aa12.15□□□□□ -0.47
VPS54-203ENST00000409558 CACNA1GO43497 2377 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 RENP00797 406 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 CDK2P24941 298 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 SPOCK1Q08629 439 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 ACKR1Q16570 336 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 KRT77Q7Z794 578 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 NAXEQ8NCW5 288 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 ARL5BQ96KC2 179 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 METTL17Q9H7H0 456 aaPredicted RBP12.14□□□□□ -0.47
VPS54-203ENST00000409558 AKIRIN1Q9H9L7 192 aaPredicted RBP12.14□□□□□ -0.47
VPS54-203ENST00000409558 ALOX12BO75342 701 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 SERPINA3P01011 423 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 GP1BBP13224 206 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 DMWDQ09019 674 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 POU4F3Q15319 338 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 C9orf40Q8IXQ3 194 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 SLC35F3Q8IY50 421 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 ZNF417Q8TAU3 575 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 ZNF587Q96SQ5 575 aaPredicted RBP12.14□□□□□ -0.47
VPS54-203ENST00000409558 SLITRK2Q9H156 845 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 TAS2R10Q9NYW0 307 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 CNOT1A5YKK6 2376 aaKnown RBP12.14□□□□□ -0.47
VPS54-203ENST00000409558 TRAV18A0A075B6X5 111 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 TLCD2A6NGC4 264 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 PPM1BO75688 479 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 GLCEO94923 617 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 S100A1P23297 94 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 SFTPDP35247 375 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 EFNB2P52799 333 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 HNRNPKP61978 463 aaKnown RBP eCLIP12.14□□□□□ -0.478e-8■□□□□ 8.4
VPS54-203ENST00000409558 ST3GAL2Q16842 350 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 RPL22L1Q6P5R6 122 aaKnown RBP12.14□□□□□ -0.47
VPS54-203ENST00000409558 NDUFAF7Q7L592 441 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 SLC29A4Q7RTT9 530 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 TMED4Q7Z7H5 227 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 LSMEM1Q8N8F7 131 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 TRIM63Q969Q1 353 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 JSRP1Q96MG2 331 aaPredicted RBP12.14□□□□□ -0.47
VPS54-203ENST00000409558 SNX18Q96RF0 628 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 B3GNT4Q9C0J1 378 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 FBXL3Q9UKT7 428 aa12.14□□□□□ -0.47
VPS54-203ENST00000409558 EFCAB7A8K855 629 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 SUSD5O60279 629 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 RBMS1P29558 406 aaKnown RBP12.13□□□□□ -0.47
VPS54-203ENST00000409558 GNALP38405 381 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 HSD17B7P56937 341 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 RSPO4Q2I0M5 234 aaPredicted RBP12.13□□□□□ -0.47
VPS54-203ENST00000409558 PRAMEF20Q5VT98 475 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 B3GNTL1Q67FW5 361 aaPredicted RBP12.13□□□□□ -0.47
VPS54-203ENST00000409558 FAM199XQ6PEV8 388 aaPredicted RBP12.13□□□□□ -0.47
VPS54-203ENST00000409558 OR14A16Q8NHC5 309 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 ADAMTS18Q8TE60 1221 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 GINS4Q9BRT9 223 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 GMEB2Q9UKD1 530 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 ELF5Q9UKW6 265 aaPredicted RBP12.13□□□□□ -0.47
VPS54-203ENST00000409558 FARSAQ9Y285 508 aaKnown RBP12.13□□□□□ -0.47
VPS54-203ENST00000409558 POM121CA8CG34 1229 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 ABCD3P28288 659 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 SLC6A1P30531 599 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 GZMKP49863 264 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 PRPS1P60891 318 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 CFHR1Q03591 330 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 SKP2Q13309 424 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 ZNF141Q15928 474 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 KLHL26Q53HC5 615 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 C11orf88Q6PI97 169 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 OR11H4Q8NGC9 324 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 ASB12Q8WXK4 309 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 FAM131CQ96AQ9 280 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms