RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 SHISA8B8ZZ34 492 aa12.07□□□□□ -0.48
LIMS1-204ENST00000409441 J3QRE1 110 aa12.07□□□□□ -0.48
LIMS1-204ENST00000409441 UPK1BO75841 260 aa12.07□□□□□ -0.48
LIMS1-204ENST00000409441 WISP1O95388 367 aa12.07□□□□□ -0.48
LIMS1-204ENST00000409441 GAAP10253 952 aa12.07□□□□□ -0.48
LIMS1-204ENST00000409441 SAGP10523 405 aaPredicted RBP12.07□□□□□ -0.48
LIMS1-204ENST00000409441 SLC6A6P31641 620 aa12.07□□□□□ -0.48
LIMS1-204ENST00000409441 GABRA5P31644 462 aa12.07□□□□□ -0.48
LIMS1-204ENST00000409441 EIF1P41567 113 aaKnown RBP12.07□□□□□ -0.48
LIMS1-204ENST00000409441 RORCP51449 518 aa12.07□□□□□ -0.48
LIMS1-204ENST00000409441 SIAH3Q8IW03 269 aa12.07□□□□□ -0.48
LIMS1-204ENST00000409441 OR13C2Q8NGS9 318 aa12.07□□□□□ -0.48
LIMS1-204ENST00000409441 DNAJA4Q8WW22 397 aaPredicted RBP12.07□□□□□ -0.48
LIMS1-204ENST00000409441 ST8SIA1Q92185 356 aa12.07□□□□□ -0.48
LIMS1-204ENST00000409441 ZBTB8AQ96BR9 441 aa12.07□□□□□ -0.48
LIMS1-204ENST00000409441 MED18Q9BUE0 208 aa12.07□□□□□ -0.48
LIMS1-204ENST00000409441 ADAM19Q9H013 955 aa12.07□□□□□ -0.48
LIMS1-204ENST00000409441 INPP5EQ9NRR6 644 aa12.07□□□□□ -0.48
LIMS1-204ENST00000409441 TXNL4BQ9NX01 149 aaKnown RBP12.07□□□□□ -0.48
LIMS1-204ENST00000409441 TNFRSF10DQ9UBN6 386 aa12.07□□□□□ -0.48
LIMS1-204ENST00000409441 SF3B6Q9Y3B4 125 aaKnown RBP12.07□□□□□ -0.48
LIMS1-204ENST00000409441 IGSF10Q6WRI0 2623 aa12.07□□□□□ -0.48
LIMS1-204ENST00000409441 PCNX3Q9H6A9 2034 aa12.06□□□□□ -0.48
LIMS1-204ENST00000409441 SLC22A31A6NKX4 558 aa12.06□□□□□ -0.48
LIMS1-204ENST00000409441 LOC110117498-PIK3R3F6TDL0 507 aa12.06□□□□□ -0.48
LIMS1-204ENST00000409441 ETV2O00321 342 aaPredicted RBP12.06□□□□□ -0.48
LIMS1-204ENST00000409441 AKAP8O43823 692 aaKnown RBP12.06□□□□□ -0.48
LIMS1-204ENST00000409441 SLC2A10O95528 541 aa12.06□□□□□ -0.48
LIMS1-204ENST00000409441 PAICSP22234 425 aaKnown RBP12.06□□□□□ -0.48
LIMS1-204ENST00000409441 FGF9P31371 208 aaPredicted RBP12.06□□□□□ -0.48
LIMS1-204ENST00000409441 SLC9A3P48764 834 aa12.06□□□□□ -0.48
LIMS1-204ENST00000409441 BDH1Q02338 343 aa12.06□□□□□ -0.48
LIMS1-204ENST00000409441 PRR30Q53SZ7 412 aaPredicted RBP12.06□□□□□ -0.48
LIMS1-204ENST00000409441 SLC25A53Q5H9E4 307 aa12.06□□□□□ -0.48
LIMS1-204ENST00000409441 OR2G6Q5TZ20 316 aa12.06□□□□□ -0.48
LIMS1-204ENST00000409441 ZNF324BQ6AW86 544 aaPredicted RBP12.06□□□□□ -0.48
LIMS1-204ENST00000409441 ARHGAP11AQ6P4F7 1023 aa12.06□□□□□ -0.48
LIMS1-204ENST00000409441 ZNF554Q86TJ5 538 aa12.06□□□□□ -0.48
LIMS1-204ENST00000409441 GTPBP8Q8N3Z3 284 aaPredicted RBP12.06□□□□□ -0.48
LIMS1-204ENST00000409441 DRAXINQ8NBI3 349 aaPredicted RBP12.06□□□□□ -0.48
LIMS1-204ENST00000409441 OR4F15Q8NGB8 312 aa12.06□□□□□ -0.48
LIMS1-204ENST00000409441 POC1BQ8TC44 478 aa12.06□□□□□ -0.48
LIMS1-204ENST00000409441 GATAD2BQ8WXI9 593 aa12.06□□□□□ -0.48
LIMS1-204ENST00000409441 MRGPRX4Q96LA9 322 aa12.06□□□□□ -0.48
LIMS1-204ENST00000409441 BBC3Q96PG8 261 aaPredicted RBP12.06□□□□□ -0.48
LIMS1-204ENST00000409441 IFT27Q9BW83 186 aa12.06□□□□□ -0.48
LIMS1-204ENST00000409441 LDAHQ9H6V9 325 aa12.06□□□□□ -0.48
LIMS1-204ENST00000409441 SMURF1Q9HCE7 757 aa12.06□□□□□ -0.48
LIMS1-204ENST00000409441 ASF1BQ9NVP2 202 aa12.06□□□□□ -0.48
LIMS1-204ENST00000409441 ERVK13-1Q9NX77 482 aa12.06□□□□□ -0.48
LIMS1-204ENST00000409441 GSTK1Q9Y2Q3 226 aa12.06□□□□□ -0.48
LIMS1-204ENST00000409441 SLC6A5Q9Y345 797 aa12.06□□□□□ -0.48
LIMS1-204ENST00000409441 CAB39Q9Y376 341 aaPredicted RBP12.06□□□□□ -0.48
LIMS1-204ENST00000409441 SPTA1P02549 2419 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 TRGV5A0A0B4J1U4 118 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 IQCMA0A1B0GVH7 501 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 OR2M5A3KFT3 312 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 RIIAD1A6NNX1 92 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 PRR23D1E9PI22 279 aaPredicted RBP12.05□□□□□ -0.48
LIMS1-204ENST00000409441 APOL3O95236 402 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 IGF2P01344 180 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 IFNGP01579 166 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 PRR23D2P0DMB1 279 aaPredicted RBP12.05□□□□□ -0.48
LIMS1-204ENST00000409441 ZNF3P17036 446 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 PTNP21246 168 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 GALP22466 123 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 ADH6P28332 368 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 TACR3P29371 465 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 ATP6V1E1P36543 226 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 RPS19P39019 145 aaKnown RBP12.05□□□□□ -0.48
LIMS1-204ENST00000409441 CAPZA2P47755 286 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 DLX5P56178 289 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 B3GALT5-AS1P59052 145 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 IFITM3Q01628 133 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 FOXF1Q12946 379 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 GPR50Q13585 617 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 KRTCAP3Q53RY4 240 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 SPANXN2Q5MJ10 180 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 RAET1LQ5VY80 246 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 PLBD1Q6P4A8 553 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 CD200R1LQ6Q8B3 271 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 THSD4Q6ZMP0 1018 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 TMPRSS11AQ6ZMR5 421 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 GRINAQ7Z429 371 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 OAFQ86UD1 273 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 CCDC190Q86UF4 302 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 BBS1Q8NFJ9 593 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 TRMT61AQ96FX7 289 aaKnown RBP12.05□□□□□ -0.48
LIMS1-204ENST00000409441 KCTD7Q96MP8 289 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 PIGQQ9BRB3 760 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 ZNF649Q9BS31 505 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 SLC19A3Q9BZV2 496 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 SLC6A15Q9H2J7 730 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 EXO5Q9H790 373 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 IL20RAQ9UHF4 553 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 ZNF337Q9Y3M9 751 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 HEATR5AQ86XA9 2040 aa12.05□□□□□ -0.48
LIMS1-204ENST00000409441 A0A087WUJ7 227 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 TRDV1A0A1B0GX56 115 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 EFNA2O43921 213 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms