RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 ROBO4Q8WZ75 1007 aa12.69□□□□□ -0.38
SKA1-202ENST00000398452 ZNF845Q96IR2 970 aaPredicted RBP12.69□□□□□ -0.38
SKA1-202ENST00000398452 LRR1Q96L50 414 aa12.69□□□□□ -0.38
SKA1-202ENST00000398452 Q96M85 177 aa12.69□□□□□ -0.38
SKA1-202ENST00000398452 ADAD1Q96M93 576 aaKnown RBP12.69□□□□□ -0.38
SKA1-202ENST00000398452 NR1H4Q96RI1 486 aaPredicted RBP12.69□□□□□ -0.38
SKA1-202ENST00000398452 PRDM14Q9GZV8 571 aa12.69□□□□□ -0.38
SKA1-202ENST00000398452 ENKD1Q9H0I2 346 aa12.69□□□□□ -0.38
SKA1-202ENST00000398452 FANCFQ9NPI8 374 aa12.69□□□□□ -0.38
SKA1-202ENST00000398452 TPRKBQ9Y3C4 175 aa12.69□□□□□ -0.38
SKA1-202ENST00000398452 MPDZO75970 2070 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 SH3D21A4FU49 640 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 SLC22A20A6NK97 555 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 FIGNL2A6NMB9 653 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 AHRRA9YTQ3 701 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 SMAD9O15198 467 aaKnown RBP12.68□□□□□ -0.38
SKA1-202ENST00000398452 GPR37O15354 613 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 PRKYO43930 277 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 CYTIPO60759 359 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 FAM20BO75063 409 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 TNFAIP8O95379 198 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 TXNDC12O95881 172 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 TPOP07202 933 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 GABRA1P14867 456 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 HIST1H1CP16403 213 aaKnown RBP12.68□□□□□ -0.38
SKA1-202ENST00000398452 EEF1B2P24534 225 aaKnown RBP12.68□□□□□ -0.38
SKA1-202ENST00000398452 PTGER4P35408 488 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 CHN2P52757 468 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 BIDP55957 195 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 CLDN17P56750 224 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 CLRN1P58418 232 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 H3F3AP84243 136 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 CDK5R2Q13319 367 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 FHL1Q13642 323 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 MELKQ14680 651 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 C3AR1Q16581 482 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 KLHL12Q53G59 568 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 LCN1P1Q5VSP4 162 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 ZNF585AQ6P3V2 769 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 GFRALQ6UXV0 394 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 FAM26EQ8N5C1 309 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 Q8NA96 180 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 SDR9C7Q8NEX9 313 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 BPIFB6Q8NFQ5 453 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 OR9K2Q8NGE7 335 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 RHOXF1Q8NHV9 184 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 CNIH3Q8TBE1 160 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 FNDC8Q8TC99 324 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 ZPLD1Q8TCW7 415 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 HDAC2Q92769 488 aaKnown RBP12.68□□□□□ -0.38
SKA1-202ENST00000398452 RASD2Q96D21 266 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 TSPAN32Q96QS1 320 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 RBP7Q96R05 134 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 UCN2Q96RP3 112 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 TRIB1Q96RU8 372 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 YTHDF1Q9BYJ9 559 aaKnown RBP12.68□□□□□ -0.38
SKA1-202ENST00000398452 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.68□□□□□ -0.38
SKA1-202ENST00000398452 MYRFQ9Y2G1 1151 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 GPR52Q9Y2T5 361 aa12.68□□□□□ -0.38
SKA1-202ENST00000398452 IRGMA1A4Y4 181 aa12.67□□□□□ -0.38
SKA1-202ENST00000398452 CLCA1A8K7I4 914 aa12.67□□□□□ -0.38
SKA1-202ENST00000398452 PRRG2O14669 202 aa12.67□□□□□ -0.38
SKA1-202ENST00000398452 WDR1O75083 606 aa12.67□□□□□ -0.38
SKA1-202ENST00000398452 IGHG1P01857 330 aa12.67□□□□□ -0.38
SKA1-202ENST00000398452 ATP6V1E1P36543 226 aa12.67□□□□□ -0.38
SKA1-202ENST00000398452 CXCR4P61073 352 aa12.67□□□□□ -0.38
SKA1-202ENST00000398452 TLE1Q04724 770 aa12.67□□□□□ -0.38
SKA1-202ENST00000398452 CRMP1Q14194 572 aa12.67□□□□□ -0.38
SKA1-202ENST00000398452 OCLNQ16625 522 aa12.67□□□□□ -0.38
SKA1-202ENST00000398452 RBM48Q5RL73 367 aaKnown RBP12.67□□□□□ -0.38
SKA1-202ENST00000398452 TMEM201Q5SNT2 666 aa12.67□□□□□ -0.38
SKA1-202ENST00000398452 C6orf141Q5SZD1 244 aa12.67□□□□□ -0.38
SKA1-202ENST00000398452 NXNL2Q5VZ03 156 aa12.67□□□□□ -0.38
SKA1-202ENST00000398452 PLBD1Q6P4A8 553 aa12.67□□□□□ -0.38
SKA1-202ENST00000398452 CPOQ8IVL8 374 aa12.67□□□□□ -0.38
SKA1-202ENST00000398452 SLC37A3Q8NCC5 494 aa12.67□□□□□ -0.38
SKA1-202ENST00000398452 OR5M9Q8NGP3 310 aa12.67□□□□□ -0.38
SKA1-202ENST00000398452 OR6N1Q8NGY5 312 aa12.67□□□□□ -0.38
SKA1-202ENST00000398452 OR2T4Q8NH00 348 aa12.67□□□□□ -0.38
SKA1-202ENST00000398452 ZNF566Q969W8 418 aa12.67□□□□□ -0.38
SKA1-202ENST00000398452 SNRNP40Q96DI7 357 aaKnown RBP12.67□□□□□ -0.38
SKA1-202ENST00000398452 SNX18Q96RF0 628 aa12.67□□□□□ -0.38
SKA1-202ENST00000398452 NMNAT3Q96T66 252 aa12.67□□□□□ -0.38
SKA1-202ENST00000398452 TUBA1CQ9BQE3 449 aa12.67□□□□□ -0.38
SKA1-202ENST00000398452 PARPBPQ9NWS1 579 aa12.67□□□□□ -0.38
SKA1-202ENST00000398452 MED29Q9NX70 200 aa12.67□□□□□ -0.38
SKA1-202ENST00000398452 ZNF226Q9NYT6 803 aa12.67□□□□□ -0.38
SKA1-202ENST00000398452 RPL36Q9Y3U8 105 aaKnown RBP12.67□□□□□ -0.38
SKA1-202ENST00000398452 ASH1LQ9NR48 2969 aaKnown RBP12.67□□□□□ -0.38
SKA1-202ENST00000398452 NCKAP5O14513 1909 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 HECTD1Q9ULT8 2610 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 SLC22A31A6NKX4 558 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 E9PQ18 207 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 M0R129 80 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 PRODHO43272 600 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 AHCYL1O43865 530 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 SLC2A10O95528 541 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 RPSAP08865 295 aaKnown RBP12.66□□□□□ -0.38
SKA1-202ENST00000398452 HOXD4P09016 255 aaPredicted RBP12.66□□□□□ -0.38
SKA1-202ENST00000398452 FREM3P0C091 2139 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms