RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 SLC35G3Q8N808 338 aa12.96□□□□□ -0.33
COL4A3-202ENST00000396578 DTD2Q96FN9 168 aa12.96□□□□□ -0.33
COL4A3-202ENST00000396578 NAA50Q9GZZ1 169 aaKnown RBP12.96□□□□□ -0.33
COL4A3-202ENST00000396578 RGPD1P0DJD0 1748 aa12.96□□□□□ -0.33
COL4A3-202ENST00000396578 IL3RAP26951 378 aa12.96□□□□□ -0.33
COL4A3-202ENST00000396578 PTGER1P34995 402 aa12.96□□□□□ -0.33
COL4A3-202ENST00000396578 SOX4Q06945 474 aaPredicted RBP12.96□□□□□ -0.33
COL4A3-202ENST00000396578 PDZK1IP1Q13113 114 aa12.96□□□□□ -0.33
COL4A3-202ENST00000396578 IAH1Q2TAA2 248 aaPredicted RBP12.96□□□□□ -0.33
COL4A3-202ENST00000396578 KCTD11Q693B1 232 aa12.96□□□□□ -0.33
COL4A3-202ENST00000396578 ERVMER34-1Q9H9K5 563 aa12.96□□□□□ -0.33
COL4A3-202ENST00000396578 OPN1LWP04000 364 aa12.96□□□□□ -0.34
COL4A3-202ENST00000396578 CPN1P15169 458 aa12.96□□□□□ -0.34
COL4A3-202ENST00000396578 ZNF252P-AS1Q0IIN9 211 aa12.96□□□□□ -0.34
COL4A3-202ENST00000396578 OR8G2PQ6IF36 304 aa12.96□□□□□ -0.34
COL4A3-202ENST00000396578 SIGLECL1Q8N7X8 197 aa12.96□□□□□ -0.34
COL4A3-202ENST00000396578 STT3BQ8TCJ2 826 aa12.96□□□□□ -0.34
COL4A3-202ENST00000396578 RPL3LQ92901 407 aaKnown RBP12.96□□□□□ -0.34
COL4A3-202ENST00000396578 NECTIN4Q96NY8 510 aa12.96□□□□□ -0.34
COL4A3-202ENST00000396578 TM7SF3Q9NS93 570 aa12.96□□□□□ -0.34
COL4A3-202ENST00000396578 SNCGO76070 127 aa12.96□□□□□ -0.34
COL4A3-202ENST00000396578 FCER1GP30273 86 aa12.96□□□□□ -0.34
COL4A3-202ENST00000396578 PDZD11Q5EBL8 140 aa12.96□□□□□ -0.34
COL4A3-202ENST00000396578 OR13F1Q8NGS4 319 aa12.96□□□□□ -0.34
COL4A3-202ENST00000396578 TREX1Q9NSU2 369 aa12.96□□□□□ -0.34
COL4A3-202ENST00000396578 RP1P56715 2156 aa12.96□□□□□ -0.34
COL4A3-202ENST00000396578 ALDOCP09972 364 aaKnown RBP12.96□□□□□ -0.34
COL4A3-202ENST00000396578 KCNJ10P78508 379 aa12.96□□□□□ -0.34
COL4A3-202ENST00000396578 VHLLQ6RSH7 139 aa12.96□□□□□ -0.34
COL4A3-202ENST00000396578 MOB1BQ7L9L4 216 aa12.96□□□□□ -0.34
COL4A3-202ENST00000396578 SUMF1Q8NBK3 374 aa12.96□□□□□ -0.34
COL4A3-202ENST00000396578 B3GAT1Q9P2W7 334 aa12.96□□□□□ -0.34
COL4A3-202ENST00000396578 FCN2Q15485 313 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 SYPL1Q16563 259 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 PKDCCQ504Y2 493 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 TP53INP2Q8IXH6 220 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 SLC38A5Q8WUX1 472 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 ZNF845Q96IR2 970 aaPredicted RBP12.95□□□□□ -0.34
COL4A3-202ENST00000396578 NPFFR2Q9Y5X5 522 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 DDX60Q8IY21 1712 aaKnown RBP12.95□□□□□ -0.34
COL4A3-202ENST00000396578 CDC14CA4D256 554 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 SHC1P29353 583 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 CLDN10P78369 228 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 RETREG3Q86VR2 466 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 MISPQ8IVT2 679 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 PCYT2Q99447 389 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 PISDQ9UG56 409 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 OR6C76A6NM76 312 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 DRD1P21728 446 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 HCCSP53701 268 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 KIAA1024LP59773 190 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 PHLDA2Q53GA4 152 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 OVCH1Q7RTY7 1134 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 OR14A16Q8NHC5 309 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 PAAF1Q9BRP4 392 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 IL17CQ9P0M4 197 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 ZNF230Q9UIE0 474 aaPredicted RBP12.95□□□□□ -0.34
COL4A3-202ENST00000396578 MUTYHQ9UIF7 546 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 KPTNQ9Y664 436 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 RFX2P48378 723 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 ZNF595Q8IYB9 648 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 MDGA1Q8NFP4 955 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 DUSP23Q9BVJ7 150 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 OPA3Q9H6K4 179 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 GNB4Q9HAV0 340 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 EMCNQ9ULC0 261 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.95□□□□□ -0.34
COL4A3-202ENST00000396578 NSG1A0A0A6YYJ2 146 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 NXPH2O95156 264 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 EDN3P14138 238 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 ACKR3P25106 362 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 DUSP1P28562 367 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 RAC1P63000 192 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 ARHGAP11BQ3KRB8 267 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 PRSS35Q8N3Z0 413 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 PNPLA1Q8N8W4 532 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 SLC35B4Q969S0 331 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 KIRREL1Q96J84 757 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 CHEK1O14757 476 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 GPR75O95800 540 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 PTBP1P26599 531 aaKnown RBP eCLIP12.95□□□□□ -0.34
COL4A3-202ENST00000396578 RPL11P62913 178 aaKnown RBP12.95□□□□□ -0.34
COL4A3-202ENST00000396578 ALKBH1Q13686 389 aaKnown RBP12.95□□□□□ -0.34
COL4A3-202ENST00000396578 OR8B8Q15620 311 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 SMAD2Q15796 467 aaKnown RBP12.95□□□□□ -0.34
COL4A3-202ENST00000396578 GLYATL3Q5SZD4 288 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 Q6ZRG5 221 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 KANSL1Q7Z3B3 1105 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 LYSMD2Q8IV50 215 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 HSD17B11Q8NBQ5 300 aa12.95□□□□□ -0.34
COL4A3-202ENST00000396578 HEYLQ9NQ87 328 aaPredicted RBP12.95□□□□□ -0.34
COL4A3-202ENST00000396578 TBPP20226 339 aa12.94□□□□□ -0.34
COL4A3-202ENST00000396578 AOAHP28039 575 aa12.94□□□□□ -0.34
COL4A3-202ENST00000396578 PRLHRP49683 370 aa12.94□□□□□ -0.34
COL4A3-202ENST00000396578 PHYHIPQ92561 330 aa12.94□□□□□ -0.34
COL4A3-202ENST00000396578 DVL3Q92997 716 aaPredicted RBP12.94□□□□□ -0.34
COL4A3-202ENST00000396578 MACROD1Q9BQ69 325 aa12.94□□□□□ -0.34
COL4A3-202ENST00000396578 TMEM221A6NGB7 291 aa12.94□□□□□ -0.34
COL4A3-202ENST00000396578 IQCF3P0C7M6 154 aa12.94□□□□□ -0.34
COL4A3-202ENST00000396578 CCR7P32248 378 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms