RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 SDC2P34741 201 aa16.39■□□□□ 0.21
CCDC88C-203ENST00000389856 SLC16A1P53985 500 aa16.39■□□□□ 0.21
CCDC88C-203ENST00000389856 PPP3R1P63098 170 aa16.39■□□□□ 0.21
CCDC88C-203ENST00000389856 ACTC1P68032 377 aa16.39■□□□□ 0.21
CCDC88C-203ENST00000389856 ACTA1P68133 377 aa16.39■□□□□ 0.21
CCDC88C-203ENST00000389856 HNRNPA0Q13151 305 aaKnown RBP16.39■□□□□ 0.21
CCDC88C-203ENST00000389856 TGIF1Q15583 401 aa16.39■□□□□ 0.21
CCDC88C-203ENST00000389856 SLC6A19Q695T7 634 aa16.39■□□□□ 0.21
CCDC88C-203ENST00000389856 H1FNTQ75WM6 255 aaPredicted RBP16.39■□□□□ 0.21
CCDC88C-203ENST00000389856 MDGA2Q7Z553 956 aa16.39■□□□□ 0.21
CCDC88C-203ENST00000389856 LHFPL3Q86UP9 236 aa16.39■□□□□ 0.21
CCDC88C-203ENST00000389856 ARIH2OSQ8N7S6 290 aa16.39■□□□□ 0.21
CCDC88C-203ENST00000389856 AGAP4Q96P64 663 aa16.39■□□□□ 0.21
CCDC88C-203ENST00000389856 KCNN2Q9H2S1 579 aa16.39■□□□□ 0.21
CCDC88C-203ENST00000389856 PLEKHB1Q9UF11 243 aaPredicted RBP16.39■□□□□ 0.21
CCDC88C-203ENST00000389856 B3GALT5Q9Y2C3 310 aa16.39■□□□□ 0.21
CCDC88C-203ENST00000389856 MRPS18CQ9Y3D5 142 aaKnown RBP16.39■□□□□ 0.21
CCDC88C-203ENST00000389856 V9GYH0 126 aa16.39■□□□□ 0.21
CCDC88C-203ENST00000389856 RIF1Q5UIP0 2472 aaKnown RBP16.39■□□□□ 0.21
CCDC88C-203ENST00000389856 FTCDNL1E5RQL4 147 aa16.38■□□□□ 0.21
CCDC88C-203ENST00000389856 SEC14L5O43304 696 aa16.38■□□□□ 0.21
CCDC88C-203ENST00000389856 SLC25A1P53007 311 aa16.38■□□□□ 0.21
CCDC88C-203ENST00000389856 FABP5Q01469 135 aa16.38■□□□□ 0.21
CCDC88C-203ENST00000389856 ZP4Q12836 540 aa16.38■□□□□ 0.21
CCDC88C-203ENST00000389856 PON3Q15166 354 aa16.38■□□□□ 0.21
CCDC88C-203ENST00000389856 OR7A5Q15622 319 aa16.38■□□□□ 0.21
CCDC88C-203ENST00000389856 C1QL3Q5VWW1 255 aa16.38■□□□□ 0.21
CCDC88C-203ENST00000389856 FAM205BPQ63HN1 556 aa16.38■□□□□ 0.21
CCDC88C-203ENST00000389856 MZT2AQ6P582 158 aa16.38■□□□□ 0.21
CCDC88C-203ENST00000389856 ZBTB8BQ8NAP8 495 aaPredicted RBP16.38■□□□□ 0.21
CCDC88C-203ENST00000389856 POMGNT2Q8NAT1 580 aa16.38■□□□□ 0.21
CCDC88C-203ENST00000389856 LSM14AQ8ND56 463 aaKnown RBP16.38■□□□□ 0.21
CCDC88C-203ENST00000389856 ADPRHL1Q8NDY3 354 aa16.38■□□□□ 0.21
CCDC88C-203ENST00000389856 ATP6V1C2Q8NEY4 427 aa16.38■□□□□ 0.21
CCDC88C-203ENST00000389856 POC1BQ8TC44 478 aa16.38■□□□□ 0.21
CCDC88C-203ENST00000389856 SNX18Q96RF0 628 aa16.38■□□□□ 0.21
CCDC88C-203ENST00000389856 SDHCQ99643 169 aaPredicted RBP16.38■□□□□ 0.21
CCDC88C-203ENST00000389856 FAM173AQ9BQD7 235 aa16.38■□□□□ 0.21
CCDC88C-203ENST00000389856 OR51V1Q9H2C8 321 aa16.38■□□□□ 0.21
CCDC88C-203ENST00000389856 PROK2Q9HC23 129 aa16.38■□□□□ 0.21
CCDC88C-203ENST00000389856 CHST11Q9NPF2 352 aa16.38■□□□□ 0.21
CCDC88C-203ENST00000389856 ANKRD10Q9NXR5 420 aa16.38■□□□□ 0.21
CCDC88C-203ENST00000389856 BABAM2Q9NXR7 383 aa16.38■□□□□ 0.21
CCDC88C-203ENST00000389856 NPAP1Q9NZP6 1156 aa16.38■□□□□ 0.21
CCDC88C-203ENST00000389856 MOKQ9UQ07 419 aa16.38■□□□□ 0.21
CCDC88C-203ENST00000389856 ADAM18Q9Y3Q7 739 aa16.38■□□□□ 0.21
CCDC88C-203ENST00000389856 GRIP1Q9Y3R0 1128 aa16.38■□□□□ 0.21
CCDC88C-203ENST00000389856 PCDHGB7Q9Y5F8 929 aa16.38■□□□□ 0.21
CCDC88C-203ENST00000389856 PCNX3Q9H6A9 2034 aa16.38■□□□□ 0.21
CCDC88C-203ENST00000389856 CPAMD8Q8IZJ3 1885 aa16.38■□□□□ 0.21
CCDC88C-203ENST00000389856 PCSK5Q92824 1860 aa16.38■□□□□ 0.21
CCDC88C-203ENST00000389856 TEX13CA0A0J9YWL9 993 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 NPIPB13A6NJU9 1138 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 LIPT2A6NK58 231 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 ZNF891A8MT65 544 aaPredicted RBP16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 B4DXG7 233 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 NPIPB4C9JG80 1138 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 PLPP3O14495 311 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 GFRA3O60609 400 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 APOL3O95236 402 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 AHCYP23526 432 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 DAP3P51398 398 aaKnown RBP16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 PUDPQ08623 228 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 GALEQ14376 348 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 GXYLT1Q4G148 440 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 ZNF362Q5T0B9 420 aaPredicted RBP16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 RAET1LQ5VY80 246 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 FAM122BQ7Z309 247 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 SDR9C7Q8NEX9 313 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 BBS1Q8NFJ9 593 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 ZNF417Q8TAU3 575 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 SPRYD4Q8WW59 207 aaPredicted RBP16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 KCNE4Q8WWG9 221 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 ACOT12Q8WYK0 555 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 PTP4A1Q93096 173 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 MRPL48Q96GC5 212 aaKnown RBP16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 C5orf34Q96MH7 638 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 ZNF587Q96SQ5 575 aaPredicted RBP16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 TEAD3Q99594 435 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 SRRQ9GZT4 340 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 RNF32Q9H0A6 362 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 TRIM36Q9NQ86 728 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 POLE4Q9NR33 117 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 TAS2R5Q9NYW4 299 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 ADAM30Q9UKF2 790 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 A6NIZ1 184 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 ARGFXA6NJG6 315 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 H3BML4 177 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 LINC01387J3KSC0 135 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 FZD7O75084 574 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 IGHMP01871 453 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 MT-ND5P03915 603 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 F13BP05160 661 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 CD96P40200 585 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 DNASE1L1P49184 302 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 CENPAP49450 140 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 RAP1BP61224 184 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 RAP1AP62834 184 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 SLC35A1P78382 337 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 TLE3Q04726 772 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms