RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 SUN5Q8TC36 379 aa13.23□□□□□ -0.29
TCOF1-202ENST00000377797 NEDD4LQ96PU5 975 aa13.23□□□□□ -0.29
TCOF1-202ENST00000377797 UCK1Q9HA47 277 aa13.23□□□□□ -0.29
TCOF1-202ENST00000377797 DNAJB12Q9NXW2 375 aaKnown RBP13.23□□□□□ -0.29
TCOF1-202ENST00000377797 NUFIP1Q9UHK0 495 aaKnown RBP13.23□□□□□ -0.29
TCOF1-202ENST00000377797 CCDC88CQ9P219 2028 aa13.23□□□□□ -0.29
TCOF1-202ENST00000377797 FUOMA2VDF0 154 aa13.23□□□□□ -0.29
TCOF1-202ENST00000377797 MAGEB4O15481 346 aaPredicted RBP13.23□□□□□ -0.29
TCOF1-202ENST00000377797 RPS27P42677 84 aaKnown RBP13.23□□□□□ -0.29
TCOF1-202ENST00000377797 GPR50Q13585 617 aa13.23□□□□□ -0.29
TCOF1-202ENST00000377797 CDNFQ49AH0 187 aa13.23□□□□□ -0.29
TCOF1-202ENST00000377797 ZMAT1Q5H9K5 638 aa13.23□□□□□ -0.29
TCOF1-202ENST00000377797 YRDCQ86U90 279 aaKnown RBP13.23□□□□□ -0.29
TCOF1-202ENST00000377797 CASTOR1Q8WTX7 329 aa13.23□□□□□ -0.29
TCOF1-202ENST00000377797 THAP7Q9BT49 309 aaPredicted RBP13.23□□□□□ -0.29
TCOF1-202ENST00000377797 NOX4Q9NPH5 578 aa13.23□□□□□ -0.29
TCOF1-202ENST00000377797 SIGLEC7Q9Y286 467 aa13.23□□□□□ -0.29
TCOF1-202ENST00000377797 ALPK2Q86TB3 2170 aa13.23□□□□□ -0.29
TCOF1-202ENST00000377797 HRKO00198 91 aa13.23□□□□□ -0.29
TCOF1-202ENST00000377797 WRBO00258 174 aa13.23□□□□□ -0.29
TCOF1-202ENST00000377797 FOXS1O43638 330 aa13.23□□□□□ -0.29
TCOF1-202ENST00000377797 DOK2O60496 412 aa13.23□□□□□ -0.29
TCOF1-202ENST00000377797 STK17BO94768 372 aa13.23□□□□□ -0.29
TCOF1-202ENST00000377797 H2AFB2P0C5Z0 115 aa13.23□□□□□ -0.29
TCOF1-202ENST00000377797 MVDP53602 400 aa13.23□□□□□ -0.29
TCOF1-202ENST00000377797 TRA2AQ13595 282 aaKnown RBP eCLIP13.23□□□□□ -0.291e-7■■■■■ 31.7
TCOF1-202ENST00000377797 Q499Y3 187 aa13.23□□□□□ -0.29
TCOF1-202ENST00000377797 DESI1Q6ICB0 168 aa13.23□□□□□ -0.29
TCOF1-202ENST00000377797 FCRLAQ7L513 359 aa13.23□□□□□ -0.29
TCOF1-202ENST00000377797 D2HGDHQ8N465 521 aa13.23□□□□□ -0.29
TCOF1-202ENST00000377797 GALNT9Q9HCQ5 603 aa13.23□□□□□ -0.29
TCOF1-202ENST00000377797 KLHL13Q9P2N7 655 aa13.23□□□□□ -0.29
TCOF1-202ENST00000377797 SLC43A1O75387 559 aa13.22□□□□□ -0.29
TCOF1-202ENST00000377797 CLUP10909 449 aa13.22□□□□□ -0.29
TCOF1-202ENST00000377797 RAB3AP20336 220 aa13.22□□□□□ -0.29
TCOF1-202ENST00000377797 STARD6P59095 220 aa13.22□□□□□ -0.29
TCOF1-202ENST00000377797 HBMQ6B0K9 141 aa13.22□□□□□ -0.29
TCOF1-202ENST00000377797 THOC7Q6I9Y2 204 aaKnown RBP13.22□□□□□ -0.29
TCOF1-202ENST00000377797 SYNPRQ8TBG9 265 aa13.22□□□□□ -0.29
TCOF1-202ENST00000377797 C3orf49Q96BT1 292 aa13.22□□□□□ -0.29
TCOF1-202ENST00000377797 KCTD12Q96CX2 325 aaKnown RBP13.22□□□□□ -0.29
TCOF1-202ENST00000377797 SARGQ9BW04 601 aa13.22□□□□□ -0.29
TCOF1-202ENST00000377797 CHST11Q9NPF2 352 aa13.22□□□□□ -0.29
TCOF1-202ENST00000377797 EMC3Q9P0I2 261 aa13.22□□□□□ -0.29
TCOF1-202ENST00000377797 EMC9Q9Y3B6 208 aa13.22□□□□□ -0.29
TCOF1-202ENST00000377797 TPRP12270 2363 aaKnown RBP13.22□□□□□ -0.29
TCOF1-202ENST00000377797 MTNR1BP49286 362 aa13.22□□□□□ -0.29
TCOF1-202ENST00000377797 FXYD6P3P58550 94 aa13.22□□□□□ -0.29
TCOF1-202ENST00000377797 HSF1Q00613 529 aa13.22□□□□□ -0.29
TCOF1-202ENST00000377797 ALKBH1Q13686 389 aaKnown RBP13.22□□□□□ -0.29
TCOF1-202ENST00000377797 FXNQ16595 210 aa13.22□□□□□ -0.29
TCOF1-202ENST00000377797 RNASE10Q5GAN6 216 aaKnown RBP13.22□□□□□ -0.29
TCOF1-202ENST00000377797 PRDM6Q9NQX0 595 aa13.22□□□□□ -0.29
TCOF1-202ENST00000377797 B3GNT3Q9Y2A9 372 aa13.22□□□□□ -0.29
TCOF1-202ENST00000377797 SFXN4Q6P4A7 337 aa13.22□□□□□ -0.29
TCOF1-202ENST00000377797 WDR74Q6RFH5 385 aaPredicted RBP13.22□□□□□ -0.29
TCOF1-202ENST00000377797 SPACA9Q96E40 222 aaPredicted RBP13.22□□□□□ -0.29
TCOF1-202ENST00000377797 SCARF2Q96GP6 870 aaPredicted RBP13.22□□□□□ -0.29
TCOF1-202ENST00000377797 OPALINQ96PE5 141 aa13.22□□□□□ -0.29
TCOF1-202ENST00000377797 NRIP3Q9NQ35 241 aa13.22□□□□□ -0.29
TCOF1-202ENST00000377797 TAS2R8Q9NYW2 309 aa13.22□□□□□ -0.29
TCOF1-202ENST00000377797 FTCDNL1E5RQL4 147 aa13.22□□□□□ -0.29
TCOF1-202ENST00000377797 TNFSF15O95150 251 aa13.22□□□□□ -0.29
TCOF1-202ENST00000377797 ARSBP15848 533 aa13.22□□□□□ -0.29
TCOF1-202ENST00000377797 ENPP1P22413 925 aa13.22□□□□□ -0.29
TCOF1-202ENST00000377797 CBLN3Q6UW01 205 aa13.22□□□□□ -0.29
TCOF1-202ENST00000377797 DHRS13Q6UX07 377 aa13.22□□□□□ -0.29
TCOF1-202ENST00000377797 TM9SF4Q92544 642 aa13.22□□□□□ -0.29
TCOF1-202ENST00000377797 VSTM2LQ96N03 204 aa13.22□□□□□ -0.29
TCOF1-202ENST00000377797 ACOXLQ9NUZ1 547 aa13.22□□□□□ -0.29
TCOF1-202ENST00000377797 FNDC1Q4ZHG4 1894 aaPredicted RBP13.22□□□□□ -0.29
TCOF1-202ENST00000377797 A0A1W2PPC1 479 aa13.21□□□□□ -0.29
TCOF1-202ENST00000377797 TOX3O15405 576 aaPredicted RBP13.21□□□□□ -0.29
TCOF1-202ENST00000377797 GSTT2P0CG29 244 aa13.21□□□□□ -0.29
TCOF1-202ENST00000377797 IL7P13232 177 aa13.21□□□□□ -0.29
TCOF1-202ENST00000377797 AP2S1P53680 142 aaPredicted RBP13.21□□□□□ -0.29
TCOF1-202ENST00000377797 ACTBP60709 375 aa13.21□□□□□ -0.29
TCOF1-202ENST00000377797 ACTG1P63261 375 aa13.21□□□□□ -0.29
TCOF1-202ENST00000377797 AKAP1Q92667 903 aaKnown RBP eCLIP13.21□□□□□ -0.29
TCOF1-202ENST00000377797 TM4SF19Q96DZ7 209 aa13.21□□□□□ -0.29
TCOF1-202ENST00000377797 C10orf90Q96M02 699 aa13.21□□□□□ -0.29
TCOF1-202ENST00000377797 MMP28Q9H239 520 aa13.21□□□□□ -0.29
TCOF1-202ENST00000377797 PILRAQ9UKJ1 303 aa13.21□□□□□ -0.29
TCOF1-202ENST00000377797 CAMK2AQ9UQM7 478 aa13.21□□□□□ -0.29
TCOF1-202ENST00000377797 GLP1RP43220 463 aa13.21□□□□□ -0.29
TCOF1-202ENST00000377797 CDK5Q00535 292 aa13.21□□□□□ -0.29
TCOF1-202ENST00000377797 FAM57BQ71RH2 274 aa13.21□□□□□ -0.29
TCOF1-202ENST00000377797 DTWD2Q8NBA8 298 aa13.21□□□□□ -0.29
TCOF1-202ENST00000377797 OR10A2Q9H208 303 aa13.21□□□□□ -0.29
TCOF1-202ENST00000377797 TBC1D24Q9ULP9 559 aa13.21□□□□□ -0.29
TCOF1-202ENST00000377797 RP1P56715 2156 aa13.21□□□□□ -0.29
TCOF1-202ENST00000377797 TEX13DA0A0J9YY54 714 aaPredicted RBP13.21□□□□□ -0.29
TCOF1-202ENST00000377797 TMEM221A6NGB7 291 aa13.21□□□□□ -0.29
TCOF1-202ENST00000377797 M0R296 226 aa13.21□□□□□ -0.29
TCOF1-202ENST00000377797 PSMA6P60900 246 aaKnown RBP13.21□□□□□ -0.29
TCOF1-202ENST00000377797 EMC4Q5J8M3 183 aa13.21□□□□□ -0.29
TCOF1-202ENST00000377797 ARTNQ5T4W7 220 aa13.21□□□□□ -0.29
TCOF1-202ENST00000377797 DCXRQ7Z4W1 244 aa13.21□□□□□ -0.29
TCOF1-202ENST00000377797 ZAR1Q86SH2 424 aa13.21□□□□□ -0.29
TCOF1-202ENST00000377797 CREB3L1Q96BA8 519 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms