RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 HINT3Q9NQE9 182 aaKnown RBP11.83□□□□□ -0.52
VPS29-201ENST00000360579 SLCO1C1Q9NYB5 712 aa11.83□□□□□ -0.52
VPS29-201ENST00000360579 NKIRAS2Q9NYR9 191 aa11.83□□□□□ -0.52
VPS29-201ENST00000360579 RPS6KB2Q9UBS0 482 aa11.83□□□□□ -0.52
VPS29-201ENST00000360579 SEC14L4Q9UDX3 406 aa11.83□□□□□ -0.52
VPS29-201ENST00000360579 FZR1Q9UM11 496 aa11.83□□□□□ -0.52
VPS29-201ENST00000360579 IFT52Q9Y366 437 aa11.83□□□□□ -0.52
VPS29-201ENST00000360579 PPIAL4AQ9Y536 164 aa11.83□□□□□ -0.52
VPS29-201ENST00000360579 TLDC2A0PJX2 215 aa11.82□□□□□ -0.52
VPS29-201ENST00000360579 TMEM247A6NEH6 219 aa11.82□□□□□ -0.52
VPS29-201ENST00000360579 CLDN25C9JDP6 229 aa11.82□□□□□ -0.52
VPS29-201ENST00000360579 CDC14BO60729 498 aa11.82□□□□□ -0.52
VPS29-201ENST00000360579 ENTPD5O75356 428 aa11.82□□□□□ -0.52
VPS29-201ENST00000360579 SPAG7O75391 227 aa11.82□□□□□ -0.52
VPS29-201ENST00000360579 IGHV2-5P01817 119 aa11.82□□□□□ -0.52
VPS29-201ENST00000360579 B4GALT1P15291 398 aa11.82□□□□□ -0.52
VPS29-201ENST00000360579 LBPP18428 481 aa11.82□□□□□ -0.52
VPS29-201ENST00000360579 GRPRP30550 384 aa11.82□□□□□ -0.52
VPS29-201ENST00000360579 RAD52P43351 418 aa11.82□□□□□ -0.52
VPS29-201ENST00000360579 MAGEB1P43366 347 aa11.82□□□□□ -0.52
VPS29-201ENST00000360579 CCL8P80075 99 aa11.82□□□□□ -0.52
VPS29-201ENST00000360579 CAMK2DQ13557 499 aa11.82□□□□□ -0.52
VPS29-201ENST00000360579 MAPK11Q15759 364 aa11.82□□□□□ -0.52
VPS29-201ENST00000360579 PDCD4Q53EL6 469 aaKnown RBP11.82□□□□□ -0.52
VPS29-201ENST00000360579 PHYHD1Q5SRE7 291 aa11.82□□□□□ -0.52
VPS29-201ENST00000360579 AVPI1Q5T686 147 aa11.82□□□□□ -0.52
VPS29-201ENST00000360579 CARD17Q5XLA6 110 aa11.82□□□□□ -0.52
VPS29-201ENST00000360579 C6orf89Q6UWU4 347 aa11.82□□□□□ -0.52
VPS29-201ENST00000360579 SERPINA11Q86U17 422 aa11.82□□□□□ -0.52
VPS29-201ENST00000360579 RETREG3Q86VR2 466 aa11.82□□□□□ -0.52
VPS29-201ENST00000360579 CLIP4Q8N3C7 705 aa11.82□□□□□ -0.52
VPS29-201ENST00000360579 RNF217Q8TC41 542 aa11.82□□□□□ -0.52
VPS29-201ENST00000360579 RAB1CQ92928 201 aa11.82□□□□□ -0.52
VPS29-201ENST00000360579 OR52E6Q96RD3 313 aa11.82□□□□□ -0.52
VPS29-201ENST00000360579 ULBP2Q9BZM5 246 aa11.82□□□□□ -0.52
VPS29-201ENST00000360579 THUMPD1Q9NXG2 353 aaKnown RBP11.82□□□□□ -0.52
VPS29-201ENST00000360579 TAAR3PQ9P1P4 343 aa11.82□□□□□ -0.52
VPS29-201ENST00000360579 PRKDCP78527 4128 aaKnown RBP11.82□□□□□ -0.52
VPS29-201ENST00000360579 TRAV36DV7A0A075B6V5 113 aa11.81□□□□□ -0.52
VPS29-201ENST00000360579 IGHV1-69-2A0A0G2JMI3 117 aa11.81□□□□□ -0.52
VPS29-201ENST00000360579 A0A0G2JPF8 293 aa11.81□□□□□ -0.52
VPS29-201ENST00000360579 ZNF726A6NNF4 738 aa11.81□□□□□ -0.52
VPS29-201ENST00000360579 POM121CA8CG34 1229 aa11.81□□□□□ -0.52
VPS29-201ENST00000360579 HNRNPCL2B2RXH8 293 aa11.81□□□□□ -0.52
VPS29-201ENST00000360579 HNRNPCL3B7ZW38 293 aa11.81□□□□□ -0.52
VPS29-201ENST00000360579 HNRNPCL1O60812 293 aaKnown RBP11.81□□□□□ -0.52
VPS29-201ENST00000360579 FSHBP01225 129 aa11.81□□□□□ -0.52
VPS29-201ENST00000360579 MT-ND5P03915 603 aa11.81□□□□□ -0.52
VPS29-201ENST00000360579 SERPINA5P05154 406 aa11.81□□□□□ -0.52
VPS29-201ENST00000360579 BCHEP06276 602 aa11.81□□□□□ -0.52
VPS29-201ENST00000360579 HNRNPCL4P0DMR1 293 aa11.81□□□□□ -0.52
VPS29-201ENST00000360579 ARAFP10398 606 aa11.81□□□□□ -0.52
VPS29-201ENST00000360579 NQO1P15559 274 aaKnown RBP11.81□□□□□ -0.52
VPS29-201ENST00000360579 PRTN3P24158 256 aa11.81□□□□□ -0.52
VPS29-201ENST00000360579 CDKN2CP42773 168 aa11.81□□□□□ -0.52
VPS29-201ENST00000360579 KLF3P57682 345 aaPredicted RBP11.81□□□□□ -0.52
VPS29-201ENST00000360579 MOGQ16653 247 aa11.81□□□□□ -0.52
VPS29-201ENST00000360579 MIDNQ504T8 468 aa11.81□□□□□ -0.52
VPS29-201ENST00000360579 NUDCD3Q8IVD9 361 aa11.81□□□□□ -0.52
VPS29-201ENST00000360579 ZNF781Q8N8C0 355 aa11.81□□□□□ -0.52
VPS29-201ENST00000360579 OR6N1Q8NGY5 312 aa11.81□□□□□ -0.52
VPS29-201ENST00000360579 SLC38A5Q8WUX1 472 aa11.81□□□□□ -0.52
VPS29-201ENST00000360579 TAAR8Q969N4 342 aa11.81□□□□□ -0.52
VPS29-201ENST00000360579 GPA33Q99795 319 aa11.81□□□□□ -0.52
VPS29-201ENST00000360579 FOXB1Q99853 325 aa11.81□□□□□ -0.52
VPS29-201ENST00000360579 DECR2Q9NUI1 292 aa11.81□□□□□ -0.52
VPS29-201ENST00000360579 ZNF224Q9NZL3 707 aa11.81□□□□□ -0.52
VPS29-201ENST00000360579 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.81□□□□□ -0.52
VPS29-201ENST00000360579 WIPI2Q9Y4P8 454 aa11.81□□□□□ -0.52
VPS29-201ENST00000360579 IGLV3-9A0A075B6K5 115 aa11.8□□□□□ -0.52
VPS29-201ENST00000360579 RFXANKO14593 260 aa11.8□□□□□ -0.52
VPS29-201ENST00000360579 TPD52L2O43399 206 aaKnown RBP11.8□□□□□ -0.52
VPS29-201ENST00000360579 ZNF250P15622 560 aa11.8□□□□□ -0.52
VPS29-201ENST00000360579 CRATP43155 626 aa11.8□□□□□ -0.52
VPS29-201ENST00000360579 DSTNP60981 165 aa11.8□□□□□ -0.52
VPS29-201ENST00000360579 IL13RA1P78552 427 aa11.8□□□□□ -0.52
VPS29-201ENST00000360579 RAB39AQ14964 217 aa11.8□□□□□ -0.52
VPS29-201ENST00000360579 HFEQ30201 348 aa11.8□□□□□ -0.52
VPS29-201ENST00000360579 ALKBH6Q3KRA9 238 aa11.8□□□□□ -0.52
VPS29-201ENST00000360579 FAM209AQ5JX71 171 aa11.8□□□□□ -0.52
VPS29-201ENST00000360579 OGFOD2Q6N063 350 aa11.8□□□□□ -0.52
VPS29-201ENST00000360579 DOK3Q7L591 496 aa11.8□□□□□ -0.52
VPS29-201ENST00000360579 PIWIL3Q7Z3Z3 882 aaKnown RBP11.8□□□□□ -0.52
VPS29-201ENST00000360579 SCAIQ8N9R8 606 aa11.8□□□□□ -0.52
VPS29-201ENST00000360579 SYT14Q8NB59 555 aa11.8□□□□□ -0.52
VPS29-201ENST00000360579 OR6S1Q8NH40 331 aa11.8□□□□□ -0.52
VPS29-201ENST00000360579 SYNPRQ8TBG9 265 aa11.8□□□□□ -0.52
VPS29-201ENST00000360579 DNAJA4Q8WW22 397 aaPredicted RBP11.8□□□□□ -0.52
VPS29-201ENST00000360579 C22orf15Q8WYQ4 148 aa11.8□□□□□ -0.52
VPS29-201ENST00000360579 C11orf40Q8WZ69 217 aa11.8□□□□□ -0.52
VPS29-201ENST00000360579 DVL3Q92997 716 aaPredicted RBP11.8□□□□□ -0.52
VPS29-201ENST00000360579 ZBTB18Q99592 522 aa11.8□□□□□ -0.52
VPS29-201ENST00000360579 EMC6Q9BV81 110 aa11.8□□□□□ -0.52
VPS29-201ENST00000360579 C1orf198Q9H425 327 aa11.8□□□□□ -0.52
VPS29-201ENST00000360579 UNKLQ9H9P5 680 aaKnown RBP11.8□□□□□ -0.52
VPS29-201ENST00000360579 OPN4Q9UHM6 478 aa11.8□□□□□ -0.52
VPS29-201ENST00000360579 RAP2CQ9Y3L5 183 aa11.8□□□□□ -0.52
VPS29-201ENST00000360579 CHST2Q9Y4C5 530 aa11.8□□□□□ -0.52
VPS29-201ENST00000360579 PPIAL4EA0A075B759 164 aa11.79□□□□□ -0.52
VPS29-201ENST00000360579 A0A087WUJ7 227 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms