RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 PER3P56645 1201 aa11.64□□□□□ -0.55
CLK3-201ENST00000345005 FXYD6P3P58550 94 aa11.64□□□□□ -0.55
CLK3-201ENST00000345005 CBFBQ13951 182 aa11.64□□□□□ -0.55
CLK3-201ENST00000345005 PCOLCEQ15113 449 aa11.64□□□□□ -0.55
CLK3-201ENST00000345005 PLA1AQ53H76 456 aa11.64□□□□□ -0.55
CLK3-201ENST00000345005 CDCP2Q5VXM1 449 aa11.64□□□□□ -0.55
CLK3-201ENST00000345005 GLRX5Q86SX6 157 aa11.64□□□□□ -0.55
CLK3-201ENST00000345005 GPALPP1Q8IXQ4 340 aa11.64□□□□□ -0.55
CLK3-201ENST00000345005 UBE2J2Q8N2K1 259 aa11.64□□□□□ -0.55
CLK3-201ENST00000345005 C9orf62Q8N4C0 152 aa11.64□□□□□ -0.55
CLK3-201ENST00000345005 SYT14Q8NB59 555 aa11.64□□□□□ -0.55
CLK3-201ENST00000345005 OR8H1Q8NGG4 311 aa11.64□□□□□ -0.55
CLK3-201ENST00000345005 OR51A7Q8NH64 312 aa11.64□□□□□ -0.55
CLK3-201ENST00000345005 SLC22A8Q8TCC7 542 aa11.64□□□□□ -0.55
CLK3-201ENST00000345005 TNFRSF13CQ96RJ3 184 aa11.64□□□□□ -0.55
CLK3-201ENST00000345005 IFT27Q9BW83 186 aa11.64□□□□□ -0.55
CLK3-201ENST00000345005 RTN4RQ9BZR6 473 aa11.64□□□□□ -0.55
CLK3-201ENST00000345005 ADAM19Q9H013 955 aa11.64□□□□□ -0.55
CLK3-201ENST00000345005 ZNF700Q9H0M5 742 aa11.64□□□□□ -0.55
CLK3-201ENST00000345005 CLEC4MQ9H2X3 399 aaPredicted RBP11.64□□□□□ -0.55
CLK3-201ENST00000345005 FN3KQ9H479 309 aa11.64□□□□□ -0.55
CLK3-201ENST00000345005 RERGLQ9H628 205 aa11.64□□□□□ -0.55
CLK3-201ENST00000345005 B3GAT2Q9NPZ5 323 aa11.64□□□□□ -0.55
CLK3-201ENST00000345005 MYOTQ9UBF9 498 aa11.64□□□□□ -0.55
CLK3-201ENST00000345005 IL20RAQ9UHF4 553 aa11.64□□□□□ -0.55
CLK3-201ENST00000345005 PADI1Q9ULC6 663 aa11.64□□□□□ -0.55
CLK3-201ENST00000345005 GPR52Q9Y2T5 361 aa11.64□□□□□ -0.55
CLK3-201ENST00000345005 PCDHGA1Q9Y5H4 931 aa11.64□□□□□ -0.55
CLK3-201ENST00000345005 TRAV27A0A087WT01 109 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 TMEM200CA6NKL6 621 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 C4orf47A7E2U8 309 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 LEUTXA8MZ59 168 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 TMEM127O75204 238 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 TPOP07202 933 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 JMJD7P0C870 316 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 SLC6A6P31641 620 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 FOLR3P41439 243 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 GPR176Q14439 515 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 P2RY14Q15391 338 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 EXT1Q16394 746 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 ZNF322Q6U7Q0 402 aaPredicted RBP11.63□□□□□ -0.55
CLK3-201ENST00000345005 C6orf15Q6UXA7 325 aaPredicted RBP11.63□□□□□ -0.55
CLK3-201ENST00000345005 C16orf47Q6ZP98 133 aaPredicted RBP11.63□□□□□ -0.55
CLK3-201ENST00000345005 TEX19Q8NA77 164 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 ELP5Q8TE02 316 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 SCMH1Q96GD3 660 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 WACQ9BTA9 647 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 TMED9Q9BVK6 235 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 B3GNT4Q9C0J1 378 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 ENKD1Q9H0I2 346 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 TRIM36Q9NQ86 728 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 FAM86C1Q9NVL1 165 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 BABAM2Q9NXR7 383 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 EIF3KQ9UBQ5 218 aaKnown RBP11.63□□□□□ -0.55
CLK3-201ENST00000345005 ZNF337Q9Y3M9 751 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 CACNG2Q9Y698 323 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 PIEZO1Q92508 2521 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 IGHV1-45A0A0A0MS14 117 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 RNF13O43567 381 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 CDC40O60508 579 aaKnown RBP eCLIP11.63□□□□□ -0.55
CLK3-201ENST00000345005 OR7A10O76100 309 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 NDUFB2O95178 105 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 NUDT14O95848 222 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 GP1BBP13224 206 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 HOXB1P14653 301 aaPredicted RBP11.63□□□□□ -0.55
CLK3-201ENST00000345005 PAICSP22234 425 aaKnown RBP11.63□□□□□ -0.55
CLK3-201ENST00000345005 TACR3P29371 465 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 FBXW4P57775 412 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 HSF2Q03933 536 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 C17orf67Q0P5P2 114 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 TEX261Q6UWH6 196 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 THSD4Q6ZMP0 1018 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 LHFPL3Q86UP9 236 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 ACBD7Q8N6N7 88 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 DUSP19Q8WTR2 217 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 LIPHQ8WWY8 451 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 ADAMTS14Q8WXS8 1223 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 HGDQ93099 445 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 MAP6Q96JE9 813 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 CMTM3Q96MX0 182 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 HDHD5Q9BXW7 423 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 ABCG5Q9H222 651 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 MCCC2Q9HCC0 563 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 GLTPQ9NZD2 209 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 PISDQ9UG56 409 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 YARS2Q9Y2Z4 477 aaKnown RBP11.63□□□□□ -0.55
CLK3-201ENST00000345005 U3KQ87 197 aa11.63□□□□□ -0.55
CLK3-201ENST00000345005 SPEGQ15772 3267 aa11.62□□□□□ -0.55
CLK3-201ENST00000345005 IGKV1D-42A0A075B6H8 117 aa11.62□□□□□ -0.55
CLK3-201ENST00000345005 CCDC187A0A096LP49 1063 aa11.62□□□□□ -0.55
CLK3-201ENST00000345005 A0A0X1KG70 313 aa11.62□□□□□ -0.55
CLK3-201ENST00000345005 ANKRD61A6NGH8 418 aa11.62□□□□□ -0.55
CLK3-201ENST00000345005 FABP7O15540 132 aa11.62□□□□□ -0.55
CLK3-201ENST00000345005 AKR7A2O43488 359 aa11.62□□□□□ -0.55
CLK3-201ENST00000345005 MT-CO3P00414 261 aa11.62□□□□□ -0.55
CLK3-201ENST00000345005 RAF1P04049 648 aa11.62□□□□□ -0.55
CLK3-201ENST00000345005 RAB40ALP0C0E4 278 aa11.62□□□□□ -0.55
CLK3-201ENST00000345005 ELK1P19419 428 aa11.62□□□□□ -0.55
CLK3-201ENST00000345005 CXCR1P25024 350 aa11.62□□□□□ -0.55
CLK3-201ENST00000345005 RAB14P61106 215 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms