RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 TAS2R43P59537 309 aa10.92□□□□□ -0.66
USP1-201ENST00000339950 ZNF85Q03923 595 aa10.92□□□□□ -0.66
USP1-201ENST00000339950 TOMM34Q15785 309 aaPredicted RBP10.92□□□□□ -0.66
USP1-201ENST00000339950 SFRP5Q5T4F7 317 aa10.92□□□□□ -0.66
USP1-201ENST00000339950 FBXO46Q6PJ61 603 aaPredicted RBP10.92□□□□□ -0.66
USP1-201ENST00000339950 ZNF680Q8NEM1 530 aa10.92□□□□□ -0.66
USP1-201ENST00000339950 TMEM41AQ96HV5 264 aa10.92□□□□□ -0.66
USP1-201ENST00000339950 C19orf43Q9BQ61 176 aa10.92□□□□□ -0.66
USP1-201ENST00000339950 C7orf50Q9BRJ6 194 aaKnown RBP10.92□□□□□ -0.66
USP1-201ENST00000339950 TRPV4Q9HBA0 871 aa10.92□□□□□ -0.66
USP1-201ENST00000339950 CES1P1Q9UKY3 287 aa10.92□□□□□ -0.66
USP1-201ENST00000339950 SLC17A4Q9Y2C5 497 aa10.92□□□□□ -0.66
USP1-201ENST00000339950 FREM3P0C091 2139 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 CELSR3Q9NYQ7 3312 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 SERINC4A6NH21 518 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 K7EQS6 105 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 ZNF593O00488 134 aaPredicted RBP10.91□□□□□ -0.66
USP1-201ENST00000339950 AGPAT2O15120 278 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 RD3LP0DJH9 198 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 CALCBP10092 127 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 EPXP11678 715 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 MTNR1BP49286 362 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 ARFIP1P53367 373 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 ACTC1P68032 377 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 ACTA1P68133 377 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 LTBQ06643 244 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 MRM1Q6IN84 353 aaKnown RBP10.91□□□□□ -0.66
USP1-201ENST00000339950 Q6ZTK2 550 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 OR11H7Q8NGC8 314 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 APOBEC4Q8WW27 367 aaKnown RBP10.91□□□□□ -0.66
USP1-201ENST00000339950 KTI12Q96EK9 354 aaPredicted RBP10.91□□□□□ -0.66
USP1-201ENST00000339950 WDR89Q96FK6 387 aaPredicted RBP10.91□□□□□ -0.66
USP1-201ENST00000339950 ACTR6Q9GZN1 396 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 C20orf85Q9H1P6 137 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 PPP1R3EQ9H7J1 279 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 ADGRL4Q9HBW9 690 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 COPS7AQ9UBW8 275 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 KLF15Q9UIH9 416 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 VPS13AQ96RL7 3174 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 METTL12A8MUP2 240 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 DCTN6O00399 190 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 CREBL2O60519 120 aaPredicted RBP10.91□□□□□ -0.66
USP1-201ENST00000339950 GALR3O60755 368 aaPredicted RBP10.91□□□□□ -0.66
USP1-201ENST00000339950 IGKV1D-16P01601 117 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 GP1BBP13224 206 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 PGAM2P15259 253 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 PI3P19957 117 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 CDKN2AP42771 156 aaKnown RBP10.91□□□□□ -0.66
USP1-201ENST00000339950 GPR143P51810 404 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 NRG3P56975 720 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 HTRA4P83105 476 aaPredicted RBP10.91□□□□□ -0.66
USP1-201ENST00000339950 DUSP8Q13202 625 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 EOGTQ5NDL2 527 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 GLB1L2Q8IW92 636 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 CA13Q8N1Q1 262 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 FAM71F1Q96KD3 344 aaPredicted RBP10.91□□□□□ -0.66
USP1-201ENST00000339950 PDE7BQ9NP56 450 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 SF3B6Q9Y3B4 125 aaKnown RBP10.91□□□□□ -0.66
USP1-201ENST00000339950 KCNAB3O43448 404 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 CHP2O43745 196 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 UBL4AP11441 157 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 ZNF35P13682 527 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 SPINK2P20155 84 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 PVALBP20472 110 aaPredicted RBP10.91□□□□□ -0.66
USP1-201ENST00000339950 SLC2A5P22732 501 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 SELENOPP49908 381 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 SNU13P55769 128 aaKnown RBP10.91□□□□□ -0.66
USP1-201ENST00000339950 ARFRP1Q13795 201 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 OR7A5Q15622 319 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 C3P1Q6ZMU1 363 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 ZNF227Q86WZ6 799 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 OR51S1Q8NGJ8 323 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 ADAMTS18Q8TE60 1221 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 PRSS27Q9BQR3 290 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 PPA2Q9H2U2 334 aa10.91□□□□□ -0.66
USP1-201ENST00000339950 F5H0A9 414 aaPredicted RBP10.9□□□□□ -0.66
USP1-201ENST00000339950 PDCD5O14737 125 aa10.9□□□□□ -0.66
USP1-201ENST00000339950 PSMB1P20618 241 aaKnown RBP10.9□□□□□ -0.66
USP1-201ENST00000339950 GUCA1AP43080 201 aaPredicted RBP10.9□□□□□ -0.66
USP1-201ENST00000339950 HTR4Q13639 388 aa10.9□□□□□ -0.66
USP1-201ENST00000339950 EIF2B1Q14232 305 aaKnown RBP10.9□□□□□ -0.66
USP1-201ENST00000339950 CD226Q15762 336 aa10.9□□□□□ -0.66
USP1-201ENST00000339950 SLC22A10Q63ZE4 541 aa10.9□□□□□ -0.66
USP1-201ENST00000339950 FAM122CQ6P4D5 195 aa10.9□□□□□ -0.66
USP1-201ENST00000339950 RHOUQ7L0Q8 258 aa10.9□□□□□ -0.66
USP1-201ENST00000339950 AKAP7Q9P0M2 348 aaPredicted RBP10.9□□□□□ -0.66
USP1-201ENST00000339950 EPOPA6NHQ4 379 aa10.9□□□□□ -0.66
USP1-201ENST00000339950 AP3S2P59780 193 aa10.9□□□□□ -0.66
USP1-201ENST00000339950 LPAL2Q16609 132 aa10.9□□□□□ -0.66
USP1-201ENST00000339950 CLPPQ16740 277 aaPredicted RBP10.9□□□□□ -0.66
USP1-201ENST00000339950 LINC00303Q3SY05 128 aa10.9□□□□□ -0.66
USP1-201ENST00000339950 ZNF425Q6IV72 752 aa10.9□□□□□ -0.66
USP1-201ENST00000339950 CHRDL2Q6WN34 429 aa10.9□□□□□ -0.66
USP1-201ENST00000339950 BPHLQ86WA6 291 aaPredicted RBP10.9□□□□□ -0.66
USP1-201ENST00000339950 OR11H4Q8NGC9 324 aa10.9□□□□□ -0.66
USP1-201ENST00000339950 POLMQ9NP87 494 aaPredicted RBP10.9□□□□□ -0.66
USP1-201ENST00000339950 MED29Q9NX70 200 aa10.9□□□□□ -0.66
USP1-201ENST00000339950 DHDHQ9UQ10 334 aa10.9□□□□□ -0.66
USP1-201ENST00000339950 GIMAP1-GIMAP5A0A087WTJ2 511 aa10.9□□□□□ -0.67
USP1-201ENST00000339950 H0YIG0 161 aa10.9□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms