RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 RPL27P61353 136 aaKnown RBP19.63■□□□□ 0.73
SDC3-202ENST00000339394 OGFRL1Q5TC84 451 aaPredicted RBP19.63■□□□□ 0.73
SDC3-202ENST00000339394 ZNF100Q8IYN0 542 aa19.63■□□□□ 0.73
SDC3-202ENST00000339394 OR6X1Q8NH79 312 aa19.63■□□□□ 0.73
SDC3-202ENST00000339394 TEX47Q8TBZ9 253 aa19.63■□□□□ 0.73
SDC3-202ENST00000339394 ASB10Q8WXI3 467 aa19.63■□□□□ 0.73
SDC3-202ENST00000339394 APH1AQ96BI3 265 aa19.63■□□□□ 0.73
SDC3-202ENST00000339394 ADAD1Q96M93 576 aaKnown RBP19.63■□□□□ 0.73
SDC3-202ENST00000339394 OR2M2Q96R28 347 aa19.63■□□□□ 0.73
SDC3-202ENST00000339394 TSSK6Q9BXA6 273 aa19.63■□□□□ 0.73
SDC3-202ENST00000339394 GRHPRQ9UBQ7 328 aa19.63■□□□□ 0.73
SDC3-202ENST00000339394 PROCRQ9UNN8 238 aa19.63■□□□□ 0.73
SDC3-202ENST00000339394 PHF3Q92576 2039 aaKnown RBP19.63■□□□□ 0.73
SDC3-202ENST00000339394 MED12LQ86YW9 2145 aa19.63■□□□□ 0.73
SDC3-202ENST00000339394 DOCK7Q96N67 2140 aa19.63■□□□□ 0.73
SDC3-202ENST00000339394 BHLHE40O14503 412 aa19.62■□□□□ 0.73
SDC3-202ENST00000339394 SMNDC1O75940 238 aaKnown RBP eCLIP19.62■□□□□ 0.73
SDC3-202ENST00000339394 PPP1R3DO95685 299 aa19.62■□□□□ 0.73
SDC3-202ENST00000339394 CD8BP10966 210 aa19.62■□□□□ 0.73
SDC3-202ENST00000339394 OR3A2P47893 321 aa19.62■□□□□ 0.73
SDC3-202ENST00000339394 RUNX1T1Q06455 604 aa19.62■□□□□ 0.73
SDC3-202ENST00000339394 CAMK2DQ13557 499 aa19.62■□□□□ 0.73
SDC3-202ENST00000339394 TFAP2EQ6VUC0 442 aa19.62■□□□□ 0.73
SDC3-202ENST00000339394 MRGPRGQ86SM5 289 aa19.62■□□□□ 0.73
SDC3-202ENST00000339394 TMEM123Q8N131 208 aa19.62■□□□□ 0.73
SDC3-202ENST00000339394 OR2T33Q8NG76 320 aa19.62■□□□□ 0.73
SDC3-202ENST00000339394 ASB5Q8WWX0 329 aa19.62■□□□□ 0.73
SDC3-202ENST00000339394 Q96M85 177 aa19.62■□□□□ 0.73
SDC3-202ENST00000339394 ERMAPQ96PL5 475 aaPredicted RBP19.62■□□□□ 0.73
SDC3-202ENST00000339394 FLNCQ14315 2725 aa19.62■□□□□ 0.73
SDC3-202ENST00000339394 ARPC3O15145 178 aa19.61■□□□□ 0.73
SDC3-202ENST00000339394 AKAP8O43823 692 aaKnown RBP19.61■□□□□ 0.73
SDC3-202ENST00000339394 APEHP13798 732 aaKnown RBP19.61■□□□□ 0.73
SDC3-202ENST00000339394 SDHAP31040 664 aa19.61■□□□□ 0.73
SDC3-202ENST00000339394 GIPRP48546 466 aa19.61■□□□□ 0.73
SDC3-202ENST00000339394 RPS6KA3P51812 740 aa19.61■□□□□ 0.73
SDC3-202ENST00000339394 CRISP1P54107 249 aa19.61■□□□□ 0.73
SDC3-202ENST00000339394 ESRRGP62508 458 aa19.61■□□□□ 0.73
SDC3-202ENST00000339394 CARD17Q5XLA6 110 aa19.61■□□□□ 0.73
SDC3-202ENST00000339394 ARIH2OSQ8N7S6 290 aa19.61■□□□□ 0.73
SDC3-202ENST00000339394 ZNF610Q8N9Z0 462 aa19.61■□□□□ 0.73
SDC3-202ENST00000339394 RELL2Q8NC24 303 aaPredicted RBP19.61■□□□□ 0.73
SDC3-202ENST00000339394 LILRB4Q8NHJ6 448 aa19.61■□□□□ 0.73
SDC3-202ENST00000339394 ZNF519Q8TB69 540 aa19.61■□□□□ 0.73
SDC3-202ENST00000339394 SLC25A44Q96H78 314 aaPredicted RBP19.61■□□□□ 0.73
SDC3-202ENST00000339394 OPN3Q9H1Y3 402 aaPredicted RBP19.61■□□□□ 0.73
SDC3-202ENST00000339394 PIGMQ9H3S5 423 aa19.61■□□□□ 0.73
SDC3-202ENST00000339394 ARHGAP21Q5T5U3 1957 aa19.61■□□□□ 0.73
SDC3-202ENST00000339394 TEX13CA0A0J9YWL9 993 aa19.61■□□□□ 0.73
SDC3-202ENST00000339394 IGHV3-9P01782 118 aa19.61■□□□□ 0.73
SDC3-202ENST00000339394 EPHA2P29317 976 aa19.61■□□□□ 0.73
SDC3-202ENST00000339394 ACVR1BP36896 505 aa19.61■□□□□ 0.73
SDC3-202ENST00000339394 POLR2IP36954 125 aaKnown RBP19.61■□□□□ 0.73
SDC3-202ENST00000339394 CDSNQ15517 529 aa19.61■□□□□ 0.73
SDC3-202ENST00000339394 TSPO2Q5TGU0 170 aa19.61■□□□□ 0.73
SDC3-202ENST00000339394 GPR139Q6DWJ6 353 aa19.61■□□□□ 0.73
SDC3-202ENST00000339394 GALNT4Q8N4A0 578 aa19.61■□□□□ 0.73
SDC3-202ENST00000339394 IQCF1Q8N6M8 205 aa19.61■□□□□ 0.73
SDC3-202ENST00000339394 OR4Q3Q8NH05 313 aa19.61■□□□□ 0.73
SDC3-202ENST00000339394 NRG4Q8WWG1 115 aa19.61■□□□□ 0.73
SDC3-202ENST00000339394 ZNF566Q969W8 418 aa19.61■□□□□ 0.73
SDC3-202ENST00000339394 RASD2Q96D21 266 aa19.61■□□□□ 0.73
SDC3-202ENST00000339394 ZNF570Q96NI8 536 aa19.61■□□□□ 0.73
SDC3-202ENST00000339394 ENOPH1Q9UHY7 261 aa19.61■□□□□ 0.73
SDC3-202ENST00000339394 PRSS50Q9UI38 385 aa19.61■□□□□ 0.73
SDC3-202ENST00000339394 ORC6Q9Y5N6 252 aa19.61■□□□□ 0.73
SDC3-202ENST00000339394 EEF1E1-BLOC1S5C9J1V9 151 aa19.6■□□□□ 0.73
SDC3-202ENST00000339394 EEF1E1O43324 174 aaKnown RBP19.6■□□□□ 0.73
SDC3-202ENST00000339394 SLC43A1O75387 559 aa19.6■□□□□ 0.73
SDC3-202ENST00000339394 TXNDC12O95881 172 aa19.6■□□□□ 0.73
SDC3-202ENST00000339394 NOS3P29474 1203 aa19.6■□□□□ 0.73
SDC3-202ENST00000339394 SRSF1Q07955 248 aaKnown RBP eCLIP19.6■□□□□ 0.73
SDC3-202ENST00000339394 LGALS3BPQ08380 585 aa19.6■□□□□ 0.73
SDC3-202ENST00000339394 NPRL3Q12980 569 aa19.6■□□□□ 0.73
SDC3-202ENST00000339394 GINS1Q14691 196 aa19.6■□□□□ 0.73
SDC3-202ENST00000339394 PTGES3Q15185 160 aaKnown RBP19.6■□□□□ 0.73
SDC3-202ENST00000339394 SLC27A4Q6P1M0 643 aa19.6■□□□□ 0.73
SDC3-202ENST00000339394 HDDC2Q7Z4H3 204 aa19.6■□□□□ 0.73
SDC3-202ENST00000339394 LUZP2Q86TE4 346 aa19.6■□□□□ 0.73
SDC3-202ENST00000339394 LNX2Q8N448 690 aa19.6■□□□□ 0.73
SDC3-202ENST00000339394 CA5BP1Q8WTZ4 195 aa19.6■□□□□ 0.73
SDC3-202ENST00000339394 ITLN2Q8WWU7 325 aaPredicted RBP19.6■□□□□ 0.73
SDC3-202ENST00000339394 MRPL13Q9BYD1 178 aaKnown RBP19.6■□□□□ 0.73
SDC3-202ENST00000339394 SLCO5A1Q9H2Y9 848 aa19.6■□□□□ 0.73
SDC3-202ENST00000339394 JKAMPQ9P055 326 aa19.6■□□□□ 0.73
SDC3-202ENST00000339394 A8MXE2 369 aa19.59■□□□□ 0.73
SDC3-202ENST00000339394 IMPA2O14732 288 aa19.59■□□□□ 0.73
SDC3-202ENST00000339394 MSTNO14793 375 aa19.59■□□□□ 0.73
SDC3-202ENST00000339394 IDH3BO43837 385 aa19.59■□□□□ 0.73
SDC3-202ENST00000339394 TRMUO75648 421 aaKnown RBP19.59■□□□□ 0.73
SDC3-202ENST00000339394 IGHG1P01857 330 aa19.59■□□□□ 0.73
SDC3-202ENST00000339394 PGA4P0DJD7 388 aa19.59■□□□□ 0.73
SDC3-202ENST00000339394 PGA3P0DJD8 388 aa19.59■□□□□ 0.73
SDC3-202ENST00000339394 ACADSP16219 412 aa19.59■□□□□ 0.73
SDC3-202ENST00000339394 AGAP20933 346 aa19.59■□□□□ 0.73
SDC3-202ENST00000339394 RAD23AP54725 363 aa19.59■□□□□ 0.73
SDC3-202ENST00000339394 CDK5Q00535 292 aa19.59■□□□□ 0.73
SDC3-202ENST00000339394 MYBPC1Q00872 1141 aa19.59■□□□□ 0.73
SDC3-202ENST00000339394 MESTQ5EB52 335 aa19.59■□□□□ 0.73
SDC3-202ENST00000339394 SLC35F1Q5T1Q4 408 aa19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms