RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 OR10H4Q8NGA5 316 aa13.88□□□□□ -0.19
LIMS1-202ENST00000338045 OR2T4Q8NH00 348 aa13.88□□□□□ -0.19
LIMS1-202ENST00000338045 TSSK2Q96PF2 358 aa13.88□□□□□ -0.19
LIMS1-202ENST00000338045 ALG8Q9BVK2 526 aa13.88□□□□□ -0.19
LIMS1-202ENST00000338045 ZFP64Q9NPA5 681 aa13.88□□□□□ -0.19
LIMS1-202ENST00000338045 VSX1Q9NZR4 365 aaPredicted RBP13.88□□□□□ -0.19
LIMS1-202ENST00000338045 B3GAT1Q9P2W7 334 aa13.88□□□□□ -0.19
LIMS1-202ENST00000338045 CDV3Q9UKY7 258 aaKnown RBP13.88□□□□□ -0.19
LIMS1-202ENST00000338045 PCDHGB7Q9Y5F8 929 aa13.88□□□□□ -0.19
LIMS1-202ENST00000338045 A0A1W2PNR3 127 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 PINLYPA6NC86 204 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 ARGFXA6NJG6 315 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 DCTN6O00399 190 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 NKX2-8O15522 239 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 PMS2P2O95744 297 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 F10P00742 488 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 RFPL3SP0C7P2 107 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 OR2T7P0C7T2 308 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 WT1P19544 449 aaPredicted RBP13.87□□□□□ -0.19
LIMS1-202ENST00000338045 SFTPDP35247 375 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 GPR85P60893 370 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 VBP1P61758 197 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 NCS1P62166 190 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 RAC1P63000 192 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 ZNF85Q03923 595 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 OR1C1Q15619 314 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 CRTC2Q53ET0 693 aaPredicted RBP13.87□□□□□ -0.19
LIMS1-202ENST00000338045 TMPRSS11AQ6ZMR5 421 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 KDM8Q8N371 416 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 OR2T27Q8NH04 317 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 SPRYD4Q8WW59 207 aaPredicted RBP13.87□□□□□ -0.19
LIMS1-202ENST00000338045 C5orf34Q96MH7 638 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 FAM173AQ9BQD7 235 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 OR51E2Q9H255 320 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 SYT4Q9H2B2 425 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 BOKQ9UMX3 212 aaPredicted RBP13.87□□□□□ -0.19
LIMS1-202ENST00000338045 NOX1Q9Y5S8 564 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 FKBP7Q9Y680 259 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 LOC102725191A0A1B0GVB3 256 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 A0A1W2PQL4 384 aaPredicted RBP13.87□□□□□ -0.19
LIMS1-202ENST00000338045 A6NIZ1 184 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 H7C1C5 153 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 LALBAP00709 142 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 OPN1LWP04000 364 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 PYCR1P32322 319 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 DAP3P51398 398 aaKnown RBP13.87□□□□□ -0.19
LIMS1-202ENST00000338045 OR2B6P58173 313 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 RAP1BP61224 184 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 LSM3P62310 102 aaKnown RBP13.87□□□□□ -0.19
LIMS1-202ENST00000338045 LCN6P62502 163 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 RAP1AP62834 184 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 HSF1Q00613 529 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 BDH1Q02338 343 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 FAM205BPQ63HN1 556 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 LINC00696Q6ZRV3 163 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 ZBTB46Q86UZ6 589 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 OR2M7Q8NG81 312 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 OR6K6Q8NGW6 343 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 ASB10Q8WXI3 467 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 TBX5Q99593 518 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 OR2B2Q9GZK3 357 aa13.87□□□□□ -0.19
LIMS1-202ENST00000338045 AKAP8O43823 692 aaKnown RBP13.86□□□□□ -0.19
LIMS1-202ENST00000338045 BCL10O95999 233 aa13.86□□□□□ -0.19
LIMS1-202ENST00000338045 SLC35A1P78382 337 aa13.86□□□□□ -0.19
LIMS1-202ENST00000338045 H3F3AP84243 136 aa13.86□□□□□ -0.19
LIMS1-202ENST00000338045 CLN3Q13286 438 aa13.86□□□□□ -0.19
LIMS1-202ENST00000338045 AGAP7PQ5VUJ5 663 aa13.86□□□□□ -0.19
LIMS1-202ENST00000338045 LIPKQ5VXJ0 399 aa13.86□□□□□ -0.19
LIMS1-202ENST00000338045 PM20D2Q8IYS1 436 aa13.86□□□□□ -0.19
LIMS1-202ENST00000338045 MDS2Q8NDY4 140 aa13.86□□□□□ -0.19
LIMS1-202ENST00000338045 FAM83FQ8NEG4 500 aaPredicted RBP13.86□□□□□ -0.19
LIMS1-202ENST00000338045 NDNFQ8TB73 568 aa13.86□□□□□ -0.19
LIMS1-202ENST00000338045 AGAP4Q96P64 663 aa13.86□□□□□ -0.19
LIMS1-202ENST00000338045 RNF32Q9H0A6 362 aa13.86□□□□□ -0.19
LIMS1-202ENST00000338045 ISG20L2Q9H9L3 353 aaKnown RBP13.86□□□□□ -0.19
LIMS1-202ENST00000338045 SRA1Q9HD15 236 aaKnown RBP13.86□□□□□ -0.19
LIMS1-202ENST00000338045 PLA2G3Q9NZ20 509 aa13.86□□□□□ -0.19
LIMS1-202ENST00000338045 ALPK2Q86TB3 2170 aa13.86□□□□□ -0.19
LIMS1-202ENST00000338045 PTPRZ1P23471 2315 aaPredicted RBP13.85□□□□□ -0.19
LIMS1-202ENST00000338045 CNTRLQ7Z7A1 2325 aa13.85□□□□□ -0.19
LIMS1-202ENST00000338045 SLC22A23A1A5C7 686 aa13.85□□□□□ -0.19
LIMS1-202ENST00000338045 AQP7P3A6NL99 342 aa13.85□□□□□ -0.19
LIMS1-202ENST00000338045 SULT2B1O00204 365 aa13.85□□□□□ -0.19
LIMS1-202ENST00000338045 SEC14L5O43304 696 aa13.85□□□□□ -0.19
LIMS1-202ENST00000338045 SELENOFO60613 162 aa13.85□□□□□ -0.19
LIMS1-202ENST00000338045 IFNGR1P15260 489 aa13.85□□□□□ -0.19
LIMS1-202ENST00000338045 PSMA1P25786 263 aaKnown RBP13.85□□□□□ -0.19
LIMS1-202ENST00000338045 UGT2B10P36537 528 aa13.85□□□□□ -0.19
LIMS1-202ENST00000338045 NAA10P41227 235 aaPredicted RBP13.85□□□□□ -0.19
LIMS1-202ENST00000338045 CRYBB2P43320 205 aa13.85□□□□□ -0.19
LIMS1-202ENST00000338045 POU3F1Q03052 451 aaPredicted RBP13.85□□□□□ -0.19
LIMS1-202ENST00000338045 RUNX1T1Q06455 604 aa13.85□□□□□ -0.19
LIMS1-202ENST00000338045 MELKQ14680 651 aa13.85□□□□□ -0.19
LIMS1-202ENST00000338045 LYPD4Q6UWN0 246 aa13.85□□□□□ -0.19
LIMS1-202ENST00000338045 GDPGP1Q6ZNW5 385 aa13.85□□□□□ -0.19
LIMS1-202ENST00000338045 SLC35D2Q76EJ3 337 aa13.85□□□□□ -0.19
LIMS1-202ENST00000338045 SSX6Q7RTT6 188 aa13.85□□□□□ -0.19
LIMS1-202ENST00000338045 SLC35F2Q8IXU6 374 aa13.85□□□□□ -0.19
LIMS1-202ENST00000338045 TIGD4Q8IY51 512 aa13.85□□□□□ -0.19
LIMS1-202ENST00000338045 SMAP2Q8WU79 429 aaPredicted RBP13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms