RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 KBTBD8Q8NFY9 601 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 OR1K1Q8NGR3 316 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 AKAP1Q92667 903 aaKnown RBP eCLIP13.86□□□□□ -0.19
CLN3-201ENST00000333496 HS6ST2Q96MM7 605 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 C1QTNF6Q9BXI9 259 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 ITPR3Q14573 2671 aa13.85□□□□□ -0.19
CLN3-201ENST00000333496 PLCE1Q9P212 2302 aa13.85□□□□□ -0.19
CLN3-201ENST00000333496 HS3ST1O14792 307 aa13.85□□□□□ -0.19
CLN3-201ENST00000333496 CLOCKO15516 846 aa13.85□□□□□ -0.19
CLN3-201ENST00000333496 PIP5K1CO60331 668 aa13.85□□□□□ -0.19
CLN3-201ENST00000333496 SERPINI2O75830 405 aa13.85□□□□□ -0.19
CLN3-201ENST00000333496 UMPSP11172 480 aa13.85□□□□□ -0.19
CLN3-201ENST00000333496 MSX2P35548 267 aaPredicted RBP13.85□□□□□ -0.19
CLN3-201ENST00000333496 ZNF83P51522 516 aa13.85□□□□□ -0.19
CLN3-201ENST00000333496 CARD17Q5XLA6 110 aa13.85□□□□□ -0.19
CLN3-201ENST00000333496 ADAM5Q6NVV9 412 aa13.85□□□□□ -0.19
CLN3-201ENST00000333496 C20orf204Q6ZNR8 217 aa13.85□□□□□ -0.19
CLN3-201ENST00000333496 OFCC1Q8IZS5 231 aa13.85□□□□□ -0.19
CLN3-201ENST00000333496 FAM86B1Q8N7N1 296 aa13.85□□□□□ -0.19
CLN3-201ENST00000333496 PIK3C3Q8NEB9 887 aa13.85□□□□□ -0.19
CLN3-201ENST00000333496 BCL2L2Q92843 193 aaPredicted RBP13.85□□□□□ -0.19
CLN3-201ENST00000333496 GPR35Q9HC97 309 aa13.85□□□□□ -0.19
CLN3-201ENST00000333496 DCAF13Q9NV06 445 aaKnown RBP13.85□□□□□ -0.19
CLN3-201ENST00000333496 AMDHD2Q9Y303 409 aa13.85□□□□□ -0.19
CLN3-201ENST00000333496 F8P00451 2351 aa13.85□□□□□ -0.19
CLN3-201ENST00000333496 SHISA9B4DS77 424 aa13.84□□□□□ -0.19
CLN3-201ENST00000333496 AKAP8O43823 692 aaKnown RBP13.84□□□□□ -0.19
CLN3-201ENST00000333496 OR7A10O76100 309 aa13.84□□□□□ -0.19
CLN3-201ENST00000333496 IFNGR1P15260 489 aa13.84□□□□□ -0.19
CLN3-201ENST00000333496 FUT1P19526 365 aa13.84□□□□□ -0.19
CLN3-201ENST00000333496 CAMK2DQ13557 499 aa13.84□□□□□ -0.19
CLN3-201ENST00000333496 CEACAM16Q2WEN9 425 aa13.84□□□□□ -0.19
CLN3-201ENST00000333496 TBRG1Q3YBR2 411 aa13.84□□□□□ -0.19
CLN3-201ENST00000333496 HMBOX1Q6NT76 420 aa13.84□□□□□ -0.19
CLN3-201ENST00000333496 C20orf196Q8IYI0 205 aa13.84□□□□□ -0.19
CLN3-201ENST00000333496 GPR137CQ8N3F9 429 aa13.84□□□□□ -0.19
CLN3-201ENST00000333496 ZNF611Q8N823 705 aa13.84□□□□□ -0.19
CLN3-201ENST00000333496 ANKK1Q8NFD2 765 aa13.84□□□□□ -0.19
CLN3-201ENST00000333496 LIPHQ8WWY8 451 aa13.84□□□□□ -0.19
CLN3-201ENST00000333496 LRR1Q96L50 414 aa13.84□□□□□ -0.19
CLN3-201ENST00000333496 ZNF184Q99676 751 aaPredicted RBP13.84□□□□□ -0.19
CLN3-201ENST00000333496 GORASP2Q9H8Y8 452 aa13.84□□□□□ -0.19
CLN3-201ENST00000333496 CRLF2Q9HC73 371 aa13.84□□□□□ -0.19
CLN3-201ENST00000333496 RPS6KA6Q9UK32 745 aa13.84□□□□□ -0.19
CLN3-201ENST00000333496 MED31Q9Y3C7 131 aa13.84□□□□□ -0.19
CLN3-201ENST00000333496 BLOC1S5-TXNDC5H3BN57 136 aa13.83□□□□□ -0.2
CLN3-201ENST00000333496 M0R3G1 203 aa13.83□□□□□ -0.2
CLN3-201ENST00000333496 ABCD4O14678 606 aa13.83□□□□□ -0.2
CLN3-201ENST00000333496 OR6A2O95222 327 aa13.83□□□□□ -0.2
CLN3-201ENST00000333496 TSPAN19P0C672 248 aa13.83□□□□□ -0.2
CLN3-201ENST00000333496 ANPEPP15144 967 aa13.83□□□□□ -0.2
CLN3-201ENST00000333496 CD40P25942 277 aa13.83□□□□□ -0.2
CLN3-201ENST00000333496 PRPS1P60891 318 aa13.83□□□□□ -0.2
CLN3-201ENST00000333496 RPL18Q07020 188 aaKnown RBP13.83□□□□□ -0.2
CLN3-201ENST00000333496 ZNF672Q499Z4 452 aaPredicted RBP13.83□□□□□ -0.2
CLN3-201ENST00000333496 SAMD4BQ5PRF9 694 aaKnown RBP13.83□□□□□ -0.2
CLN3-201ENST00000333496 SLC35D2Q76EJ3 337 aa13.83□□□□□ -0.2
CLN3-201ENST00000333496 NANOGNBQ7Z5D8 188 aa13.83□□□□□ -0.2
CLN3-201ENST00000333496 PIGTQ969N2 578 aa13.83□□□□□ -0.2
CLN3-201ENST00000333496 CCDC124Q96CT7 223 aaKnown RBP13.83□□□□□ -0.2
CLN3-201ENST00000333496 SGTBQ96EQ0 304 aa13.83□□□□□ -0.2
CLN3-201ENST00000333496 C7orf34Q96L11 122 aa13.83□□□□□ -0.2
CLN3-201ENST00000333496 CCL19Q99731 98 aa13.83□□□□□ -0.2
CLN3-201ENST00000333496 PIP5K1AQ99755 562 aa13.83□□□□□ -0.2
CLN3-201ENST00000333496 FNDC11Q9BVV2 318 aa13.83□□□□□ -0.2
CLN3-201ENST00000333496 VCX3BQ9H321 246 aa13.83□□□□□ -0.2
CLN3-201ENST00000333496 BEX4Q9NWD9 120 aaPredicted RBP13.83□□□□□ -0.2
CLN3-201ENST00000333496 USF3Q68DE3 2245 aa13.83□□□□□ -0.2
CLN3-201ENST00000333496 A0A096LPE4 126 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 A0A1W2PPZ6 126 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 M0R1B8 84 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 RNF13O43567 381 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 HIST1H2ABP04908 130 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 PTAFRP25105 342 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 BIDP55957 195 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 ARF1P84077 181 aaKnown RBP13.82□□□□□ -0.2
CLN3-201ENST00000333496 SPOCK1Q08629 439 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 MELKQ14680 651 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 ANKRD16Q6P6B7 361 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 TMEM108Q6UXF1 575 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 HIST3H2AQ7L7L0 130 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 KRTAP1-3Q8IUG1 177 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 MAGEE2Q8TD90 523 aaPredicted RBP13.82□□□□□ -0.2
CLN3-201ENST00000333496 NRG4Q8WWG1 115 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 HIST1H2ACQ93077 130 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 VCXQ9H320 206 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 ENPP4Q9Y6X5 453 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 A0A087WUU8 490 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 ZNF726A6NNF4 738 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 F13BP05160 661 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 DANCRP0C864 163 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 HOXC12P31275 282 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 IFNA8P32881 189 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 AQP2P41181 271 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 SH3BGRP55822 239 aaPredicted RBP13.82□□□□□ -0.2
CLN3-201ENST00000333496 ADAM8P78325 824 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 VLDLRP98155 873 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 TRAM2Q15035 370 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 IQCCQ4KMZ1 466 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 C1QTNF12Q5T7M4 302 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms