RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 TBPL2Q6SJ96 375 aa12.29□□□□□ -0.44
LIMS1-201ENST00000332345 TMEM108Q6UXF1 575 aa12.29□□□□□ -0.44
LIMS1-201ENST00000332345 ZNF704Q6ZNC4 412 aaPredicted RBP12.29□□□□□ -0.44
LIMS1-201ENST00000332345 TMPRSS11FQ6ZWK6 438 aa12.29□□□□□ -0.44
LIMS1-201ENST00000332345 LINGO2Q7L985 606 aa12.29□□□□□ -0.44
LIMS1-201ENST00000332345 HDDC2Q7Z4H3 204 aa12.29□□□□□ -0.44
LIMS1-201ENST00000332345 OAFQ86UD1 273 aa12.29□□□□□ -0.44
LIMS1-201ENST00000332345 WDR31Q8NA23 367 aa12.29□□□□□ -0.44
LIMS1-201ENST00000332345 OR1K1Q8NGR3 316 aa12.29□□□□□ -0.44
LIMS1-201ENST00000332345 SLC7A13Q8TCU3 470 aa12.29□□□□□ -0.44
LIMS1-201ENST00000332345 MAGEE2Q8TD90 523 aaPredicted RBP12.29□□□□□ -0.44
LIMS1-201ENST00000332345 BCL2L2Q92843 193 aaPredicted RBP12.29□□□□□ -0.44
LIMS1-201ENST00000332345 ZNF566Q969W8 418 aa12.29□□□□□ -0.44
LIMS1-201ENST00000332345 SLC25A44Q96H78 314 aaPredicted RBP12.29□□□□□ -0.44
LIMS1-201ENST00000332345 RADILQ96JH8 1075 aa12.29□□□□□ -0.44
LIMS1-201ENST00000332345 HS3ST6Q96QI5 342 aa12.29□□□□□ -0.44
LIMS1-201ENST00000332345 TMEM204Q9BSN7 226 aa12.29□□□□□ -0.44
LIMS1-201ENST00000332345 LIME1Q9H400 295 aa12.29□□□□□ -0.44
LIMS1-201ENST00000332345 KRCC1Q9NPI7 259 aaPredicted RBP12.29□□□□□ -0.44
LIMS1-201ENST00000332345 STX18Q9P2W9 335 aaKnown RBP12.29□□□□□ -0.44
LIMS1-201ENST00000332345 ITGB1BP2Q9UKP3 347 aa12.29□□□□□ -0.44
LIMS1-201ENST00000332345 MGAT4BQ9UQ53 548 aa12.29□□□□□ -0.44
LIMS1-201ENST00000332345 TMEM5Q9Y2B1 443 aa12.29□□□□□ -0.44
LIMS1-201ENST00000332345 HIF3AQ9Y2N7 669 aa12.29□□□□□ -0.44
LIMS1-201ENST00000332345 RNF115Q9Y4L5 304 aa12.29□□□□□ -0.44
LIMS1-201ENST00000332345 ROS1P08922 2347 aa12.29□□□□□ -0.44
LIMS1-201ENST00000332345 CADP27708 2225 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 A0A1W2PPR1 153 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 A0A1W2PR80 420 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 DPRXA6NFQ7 191 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 ZNF99A8MXY4 864 aaPredicted RBP12.28□□□□□ -0.44
LIMS1-201ENST00000332345 MCIDASD6RGH6 385 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 CLOCKO15516 846 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 PDE5AO76074 875 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 DIRAS1O95057 198 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 GADD45GO95257 159 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 RAF1P04049 648 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 SEMG1P04279 462 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 MAKP20794 623 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 FUT4P22083 530 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 PTAFRP25105 342 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 RASSF2P50749 326 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 DAP3P51398 398 aaKnown RBP12.28□□□□□ -0.44
LIMS1-201ENST00000332345 LSM11P83369 360 aaKnown RBP eCLIP12.28□□□□□ -0.44
LIMS1-201ENST00000332345 ARF1P84077 181 aaKnown RBP12.28□□□□□ -0.44
LIMS1-201ENST00000332345 MS4A2Q01362 244 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 BSPH1Q075Z2 132 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 TRAP1Q12931 704 aaKnown RBP12.28□□□□□ -0.44
LIMS1-201ENST00000332345 TAF11Q15544 211 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 ACKR1Q16570 336 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 CEACAM16Q2WEN9 425 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 IQCCQ4KMZ1 466 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 ALG10Q5BKT4 473 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 LCN8Q6JVE9 175 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 PAMR1Q6UXH9 720 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 PIWIL3Q7Z3Z3 882 aaKnown RBP12.28□□□□□ -0.44
LIMS1-201ENST00000332345 ZDHHC21Q8IVQ6 265 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 CCDC36Q8IYA8 594 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 DEPDC4Q8N2C3 294 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 OR52J3Q8NH60 311 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 ASB9Q96DX5 294 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 DHRS1Q96LJ7 313 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 LRGUKQ96M69 825 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 SEPHS2Q99611 448 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 BTBD10Q9BSF8 475 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 ULBP2Q9BZM5 246 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 NDEL1Q9GZM8 345 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 UBTD1Q9HAC8 227 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 MOV10Q9HCE1 1003 aaKnown RBP12.28□□□□□ -0.44
LIMS1-201ENST00000332345 GLTPQ9NZD2 209 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 POFUT2Q9Y2G5 429 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 PLEKHA6Q9Y2H5 1048 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 HRNRQ86YZ3 2850 aaPredicted RBP12.28□□□□□ -0.44
LIMS1-201ENST00000332345 DSCAMO60469 2012 aa12.28□□□□□ -0.44
LIMS1-201ENST00000332345 NPIPB13A6NJU9 1138 aa12.27□□□□□ -0.45
LIMS1-201ENST00000332345 CENPBD1B2RD01 187 aa12.27□□□□□ -0.45
LIMS1-201ENST00000332345 NPIPB4C9JG80 1138 aa12.27□□□□□ -0.45
LIMS1-201ENST00000332345 ATP5HO75947 161 aa12.27□□□□□ -0.45
LIMS1-201ENST00000332345 KRT36O76013 467 aa12.27□□□□□ -0.45
LIMS1-201ENST00000332345 IGHG1P01857 330 aa12.27□□□□□ -0.45
LIMS1-201ENST00000332345 ZNF83P51522 516 aa12.27□□□□□ -0.45
LIMS1-201ENST00000332345 IST1P53990 364 aa12.27□□□□□ -0.45
LIMS1-201ENST00000332345 SPIBQ01892 262 aa12.27□□□□□ -0.45
LIMS1-201ENST00000332345 TBRG1Q3YBR2 411 aa12.27□□□□□ -0.45
LIMS1-201ENST00000332345 ZBED5Q49AG3 693 aa12.27□□□□□ -0.45
LIMS1-201ENST00000332345 HIKESHIQ53FT3 197 aa12.27□□□□□ -0.45
LIMS1-201ENST00000332345 ADAM5Q6NVV9 412 aa12.27□□□□□ -0.45
LIMS1-201ENST00000332345 SEZ6L2Q6UXD5 910 aa12.27□□□□□ -0.45
LIMS1-201ENST00000332345 C20orf204Q6ZNR8 217 aa12.27□□□□□ -0.45
LIMS1-201ENST00000332345 OR51A7Q8NH64 312 aa12.27□□□□□ -0.45
LIMS1-201ENST00000332345 MOSPD2Q8NHP6 518 aa12.27□□□□□ -0.45
LIMS1-201ENST00000332345 TMEM54Q969K7 222 aa12.27□□□□□ -0.45
LIMS1-201ENST00000332345 TNFRSF13CQ96RJ3 184 aa12.27□□□□□ -0.45
LIMS1-201ENST00000332345 C1QTNF6Q9BXI9 259 aa12.27□□□□□ -0.45
LIMS1-201ENST00000332345 TRIM15Q9C019 465 aa12.27□□□□□ -0.45
LIMS1-201ENST00000332345 TXNIPQ9H3M7 391 aa12.27□□□□□ -0.45
LIMS1-201ENST00000332345 MAGIXQ9H6Y5 334 aa12.27□□□□□ -0.45
LIMS1-201ENST00000332345 CCM2LQ9NUG4 571 aaPredicted RBP12.27□□□□□ -0.45
LIMS1-201ENST00000332345 NPAP1Q9NZP6 1156 aa12.27□□□□□ -0.45
LIMS1-201ENST00000332345 TMCC3Q9ULS5 477 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms