RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 AK4P27144 223 aaPredicted RBP12.3□□□□□ -0.44
SKA3-201ENST00000298260 POLR2LP62875 67 aaKnown RBP12.3□□□□□ -0.44
SKA3-201ENST00000298260 TCEA2Q15560 299 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 NCMAPQ5T1S8 102 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 MRPL2Q5T653 305 aaKnown RBP12.3□□□□□ -0.44
SKA3-201ENST00000298260 NKAIN2Q5VXU1 208 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 RPL22L1Q6P5R6 122 aaKnown RBP12.3□□□□□ -0.44
SKA3-201ENST00000298260 KRT77Q7Z794 578 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 OR7G2Q8NG99 324 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 OR4K14Q8NGD5 310 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 CASTOR1Q8WTX7 329 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 RHOVQ96L33 236 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 CASD1Q96PB1 797 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 CCL26Q9Y258 94 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 HS3ST2Q9Y278 367 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 IER3IP1Q9Y5U9 82 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 EML5Q05BV3 1969 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 TMEM82A0PJX8 343 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 SULT2B1O00204 365 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 CLN5O75503 358 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 CCL5P13501 91 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 PGAM2P15259 253 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 MUC1P15941 1255 aaPredicted RBP12.3□□□□□ -0.44
SKA3-201ENST00000298260 ABOP16442 354 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 ABCD3P28288 659 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 RAB5BP61020 215 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 DHRS2Q13268 280 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 EXOSC6Q5RKV6 272 aaKnown RBP12.3□□□□□ -0.44
SKA3-201ENST00000298260 LIPNQ5VXI9 398 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 TMEM215Q68D42 235 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 KCTD9Q7L273 389 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 MISPQ8IVT2 679 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 DCUN1D3Q8IWE4 304 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 ETFBKMTQ8IXQ9 262 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 BHLHE23Q8NDY6 225 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 ROBO4Q8WZ75 1007 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 TFGQ92734 400 aaPredicted RBP12.3□□□□□ -0.44
SKA3-201ENST00000298260 LMF1Q96S06 567 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 CNN2Q99439 309 aaKnown RBP12.3□□□□□ -0.44
SKA3-201ENST00000298260 C20orf24Q9BUV8 137 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 OR51M1Q9H341 326 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 ZDHHC4Q9NPG8 344 aa12.3□□□□□ -0.44
SKA3-201ENST00000298260 TSPAN11A1L157 253 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 MAPK3P27361 379 aaPredicted RBP12.29□□□□□ -0.44
SKA3-201ENST00000298260 PRKAR1BP31321 381 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 OR2B8PP59922 312 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 DUSP5Q16690 384 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 STEAP1BQ6NZ63 245 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 UNQ9370/PRO34162Q6UXP9 181 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 OR2L13Q8N349 312 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 OR4S1Q8NGB4 309 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 ELP5Q8TE02 316 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 NR4A3Q92570 626 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 RHBGQ9H310 441 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 SFXN1Q9H9B4 322 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 OR2S2Q9NQN1 319 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 COMMD9Q9P000 198 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 IGKV1-8A0A0C4DH67 115 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 hCG_1809904A0A1W2PP81 198 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 A0A1W2PR64 198 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 A0A1W2PRV1 198 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 TRAPPC13A5PLN9 417 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 H7C4K7 107 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 RCBTB2O95199 551 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 HLA-AP01891 365 aaKnown RBP12.29□□□□□ -0.44
SKA3-201ENST00000298260 AMY2AP04746 511 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 AKAIN1P0CW23 69 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 FAUP35544 74 aaKnown RBP12.29□□□□□ -0.44
SKA3-201ENST00000298260 SLC9A5Q14940 896 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 LCTLQ6UWM7 567 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 CD163Q86VB7 1156 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 DMRTC2Q8IXT2 367 aaPredicted RBP12.29□□□□□ -0.44
SKA3-201ENST00000298260 GJD3Q8N144 294 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 ACOT4Q8N9L9 421 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 TIFAQ96CG3 184 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 MRPL38Q96DV4 380 aaKnown RBP12.29□□□□□ -0.44
SKA3-201ENST00000298260 DZANK1Q9NVP4 752 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 KLHDC2Q9Y2U9 406 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 GGT3PA6NGU5 568 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 A6NLC8 198 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 MCIDASD6RGH6 385 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 EMC8O43402 210 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 SULT1B1O43704 296 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 TBX19O60806 448 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 CPT2P23786 658 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 CD34P28906 385 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 ACTC1P68032 377 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 ACTA1P68133 377 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 LINC01555Q8NAE3 123 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 OR4E2Q8NGC2 313 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 OR5AP2Q8NGF4 316 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 OR1J4Q8NGS1 313 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 SETD7Q8WTS6 366 aaKnown RBP12.29□□□□□ -0.44
SKA3-201ENST00000298260 RNF166Q96A37 237 aaPredicted RBP12.29□□□□□ -0.44
SKA3-201ENST00000298260 RASD2Q96D21 266 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 ZNF281Q9Y2X9 895 aa12.29□□□□□ -0.44
SKA3-201ENST00000298260 SPTBN5Q9NRC6 3674 aaKnown RBP12.28□□□□□ -0.44
SKA3-201ENST00000298260 A0A1B0GV90 55 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 C13orf42A0A1B0GVH6 325 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 DOK2O60496 412 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms