RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 EMC6Q9BV81 110 aa17.02■□□□□ 0.32
PCDH1-201ENST00000287008 EIF5A2Q9GZV4 153 aaKnown RBP17.02■□□□□ 0.32
PCDH1-201ENST00000287008 FAIMQ9NVQ4 179 aa17.02■□□□□ 0.32
PCDH1-201ENST00000287008 EHFQ9NZC4 300 aa17.02■□□□□ 0.32
PCDH1-201ENST00000287008 B3GAT1Q9P2W7 334 aa17.02■□□□□ 0.32
PCDH1-201ENST00000287008 PMS2P1A4D2B8 440 aa17.02■□□□□ 0.32
PCDH1-201ENST00000287008 SOCS6O14544 535 aa17.02■□□□□ 0.32
PCDH1-201ENST00000287008 ALDOBP05062 364 aa17.02■□□□□ 0.32
PCDH1-201ENST00000287008 UBCP0CG48 685 aaKnown RBP17.02■□□□□ 0.32
PCDH1-201ENST00000287008 MMP11P24347 488 aa17.02■□□□□ 0.32
PCDH1-201ENST00000287008 DHRS4L2Q6PKH6 230 aa17.02■□□□□ 0.32
PCDH1-201ENST00000287008 SUN5Q8TC36 379 aa17.02■□□□□ 0.32
PCDH1-201ENST00000287008 ZFAND1Q8TCF1 268 aa17.02■□□□□ 0.32
PCDH1-201ENST00000287008 EGLN1Q9GZT9 426 aa17.02■□□□□ 0.32
PCDH1-201ENST00000287008 C4orf47A7E2U8 309 aa17.02■□□□□ 0.32
PCDH1-201ENST00000287008 TRIM23P36406 574 aa17.02■□□□□ 0.32
PCDH1-201ENST00000287008 PPIAP62937 165 aaKnown RBP17.02■□□□□ 0.32
PCDH1-201ENST00000287008 CD163Q86VB7 1156 aa17.02■□□□□ 0.32
PCDH1-201ENST00000287008 C1orf210Q8IVY1 113 aa17.02■□□□□ 0.32
PCDH1-201ENST00000287008 STEAP1Q9UHE8 339 aa17.02■□□□□ 0.32
PCDH1-201ENST00000287008 ASB1Q9Y576 335 aa17.02■□□□□ 0.32
PCDH1-201ENST00000287008 SSC5DA1L4H1 1573 aa17.02■□□□□ 0.31
PCDH1-201ENST00000287008 SVILO95425 2214 aa17.02■□□□□ 0.31
PCDH1-201ENST00000287008 DOK2O60496 412 aa17.02■□□□□ 0.31
PCDH1-201ENST00000287008 GABRA5P31644 462 aa17.02■□□□□ 0.31
PCDH1-201ENST00000287008 OPRL1P41146 370 aa17.02■□□□□ 0.31
PCDH1-201ENST00000287008 RPS23P62266 143 aaKnown RBP17.02■□□□□ 0.31
PCDH1-201ENST00000287008 IL13RA1P78552 427 aa17.02■□□□□ 0.31
PCDH1-201ENST00000287008 CATR1Q13166 79 aa17.02■□□□□ 0.31
PCDH1-201ENST00000287008 SF3A2Q15428 464 aaKnown RBP17.02■□□□□ 0.31
PCDH1-201ENST00000287008 LTC4SQ16873 150 aa17.02■□□□□ 0.31
PCDH1-201ENST00000287008 SPRED1Q7Z699 444 aa17.02■□□□□ 0.31
PCDH1-201ENST00000287008 NKAIN4Q8IVV8 208 aa17.02■□□□□ 0.31
PCDH1-201ENST00000287008 OR56B2PQ8NGI1 322 aa17.02■□□□□ 0.31
PCDH1-201ENST00000287008 ST8SIA1Q92185 356 aa17.02■□□□□ 0.31
PCDH1-201ENST00000287008 C7orf50Q9BRJ6 194 aaKnown RBP17.02■□□□□ 0.31
PCDH1-201ENST00000287008 MFRPQ9BY79 579 aa17.02■□□□□ 0.31
PCDH1-201ENST00000287008 SERGEFQ9UGK8 458 aa17.02■□□□□ 0.31
PCDH1-201ENST00000287008 UBQLN2Q9UHD9 624 aa17.02■□□□□ 0.31
PCDH1-201ENST00000287008 STMND1H3BQB6 276 aa17.01■□□□□ 0.31
PCDH1-201ENST00000287008 ARPC1BO15143 372 aaKnown RBP17.01■□□□□ 0.31
PCDH1-201ENST00000287008 KLK10O43240 276 aa17.01■□□□□ 0.31
PCDH1-201ENST00000287008 CAMLGP49069 296 aa17.01■□□□□ 0.31
PCDH1-201ENST00000287008 RPP30P78346 268 aaKnown RBP17.01■□□□□ 0.31
PCDH1-201ENST00000287008 ZNF169Q14929 603 aaPredicted RBP17.01■□□□□ 0.31
PCDH1-201ENST00000287008 KCTD12Q96CX2 325 aaKnown RBP17.01■□□□□ 0.31
PCDH1-201ENST00000287008 IER2Q9BTL4 223 aa17.01■□□□□ 0.31
PCDH1-201ENST00000287008 CHST11Q9NPF2 352 aa17.01■□□□□ 0.31
PCDH1-201ENST00000287008 SPTBN2O15020 2390 aa17.01■□□□□ 0.31
PCDH1-201ENST00000287008 A0A087WV62 115 aa17.01■□□□□ 0.31
PCDH1-201ENST00000287008 B8ZZF3 427 aa17.01■□□□□ 0.31
PCDH1-201ENST00000287008 SGCEO43556 437 aa17.01■□□□□ 0.31
PCDH1-201ENST00000287008 GLCEO94923 617 aa17.01■□□□□ 0.31
PCDH1-201ENST00000287008 BSGP35613 385 aa17.01■□□□□ 0.31
PCDH1-201ENST00000287008 PNLIPRP2P54317 469 aa17.01■□□□□ 0.31
PCDH1-201ENST00000287008 MTFR2Q6P444 385 aa17.01■□□□□ 0.31
PCDH1-201ENST00000287008 OR4N2Q8NGD1 307 aa17.01■□□□□ 0.31
PCDH1-201ENST00000287008 NIPSNAP1Q9BPW8 284 aa17.01■□□□□ 0.31
PCDH1-201ENST00000287008 R4GN57 208 aa17.01■□□□□ 0.31
PCDH1-201ENST00000287008 LRRC30A6NM36 301 aa17.01■□□□□ 0.31
PCDH1-201ENST00000287008 DPM1O60762 260 aa17.01■□□□□ 0.31
PCDH1-201ENST00000287008 OR2J2O76002 312 aa17.01■□□□□ 0.31
PCDH1-201ENST00000287008 HTR2CP28335 458 aa17.01■□□□□ 0.31
PCDH1-201ENST00000287008 F2RL1P55085 397 aa17.01■□□□□ 0.31
PCDH1-201ENST00000287008 MSMO1Q15800 293 aa17.01■□□□□ 0.31
PCDH1-201ENST00000287008 SLC35D3Q5M8T2 416 aa17.01■□□□□ 0.31
PCDH1-201ENST00000287008 AGAP6Q5VW22 663 aa17.01■□□□□ 0.31
PCDH1-201ENST00000287008 PRICKLE2Q7Z3G6 844 aa17.01■□□□□ 0.31
PCDH1-201ENST00000287008 CDX2Q99626 313 aaPredicted RBP17.01■□□□□ 0.31
PCDH1-201ENST00000287008 MRPS28Q9Y2Q9 187 aaKnown RBP17.01■□□□□ 0.31
PCDH1-201ENST00000287008 P2RY10O00398 339 aa17.01■□□□□ 0.31
PCDH1-201ENST00000287008 HMGN4O00479 90 aa17.01■□□□□ 0.31
PCDH1-201ENST00000287008 GRB2P62993 217 aaKnown RBP17.01■□□□□ 0.31
PCDH1-201ENST00000287008 LSAMPQ13449 338 aa17.01■□□□□ 0.31
PCDH1-201ENST00000287008 DLEU7Q6UYE1 221 aa17.01■□□□□ 0.31
PCDH1-201ENST00000287008 HYLS1Q96M11 299 aa17.01■□□□□ 0.31
PCDH1-201ENST00000287008 OR6C65A6NJZ3 312 aa17■□□□□ 0.31
PCDH1-201ENST00000287008 SSX5O60225 188 aa17■□□□□ 0.31
PCDH1-201ENST00000287008 HPGDSO60760 199 aa17■□□□□ 0.31
PCDH1-201ENST00000287008 TUBG1P23258 451 aa17■□□□□ 0.31
PCDH1-201ENST00000287008 TAS2R46P59540 309 aa17■□□□□ 0.31
PCDH1-201ENST00000287008 CLN3Q13286 438 aa17■□□□□ 0.31
PCDH1-201ENST00000287008 DCXRQ7Z4W1 244 aa17■□□□□ 0.31
PCDH1-201ENST00000287008 LAT2Q9GZY6 243 aa17■□□□□ 0.31
PCDH1-201ENST00000287008 LANCL2Q9NS86 450 aa17■□□□□ 0.31
PCDH1-201ENST00000287008 SEMA4GQ9NTN9 838 aa17■□□□□ 0.31
PCDH1-201ENST00000287008 COA3Q9Y2R0 106 aaPredicted RBP17■□□□□ 0.31
PCDH1-201ENST00000287008 COL22A1Q8NFW1 1626 aaPredicted RBP17■□□□□ 0.31
PCDH1-201ENST00000287008 GOSR2O14653 212 aa17■□□□□ 0.31
PCDH1-201ENST00000287008 KLK8O60259 260 aa17■□□□□ 0.31
PCDH1-201ENST00000287008 SEC14L2O76054 403 aa17■□□□□ 0.31
PCDH1-201ENST00000287008 IL9P15248 144 aa17■□□□□ 0.31
PCDH1-201ENST00000287008 CPT2P23786 658 aa17■□□□□ 0.31
PCDH1-201ENST00000287008 BLVRBP30043 206 aaPredicted RBP17■□□□□ 0.31
PCDH1-201ENST00000287008 RPS18P62269 152 aaKnown RBP17■□□□□ 0.31
PCDH1-201ENST00000287008 HSF1Q00613 529 aa17■□□□□ 0.31
PCDH1-201ENST00000287008 TRA2AQ13595 282 aaKnown RBP eCLIP17■□□□□ 0.31
PCDH1-201ENST00000287008 TSPAN10Q9H1Z9 355 aaPredicted RBP17■□□□□ 0.31
PCDH1-201ENST00000287008 LIN7BQ9HAP6 207 aa17■□□□□ 0.31
PCDH1-201ENST00000287008 NUBP2Q9Y5Y2 271 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms