RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 SLC45A1Q9Y2W3 748 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 TIMM9Q9Y5J7 89 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 PLIN4Q96Q06 1357 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 M0R1B8 84 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 CA3P07451 260 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 ELK1P19419 428 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 ADIPOR1Q96A54 375 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 PARP12Q9H0J9 701 aaKnown RBP10.56□□□□□ -0.72
PTPN4-201ENST00000263708 RAB6CQ9H0N0 254 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 MED9Q9NWA0 146 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 TMEM181Q9P2C4 612 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 PARP4Q9UKK3 1724 aaKnown RBP10.56□□□□□ -0.72
PTPN4-201ENST00000263708 NUDT1P36639 197 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 SH3BP2P78314 561 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 OR13C2Q8NGS9 318 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 SMAP2Q8WU79 429 aaPredicted RBP10.56□□□□□ -0.72
PTPN4-201ENST00000263708 RANBP9Q96S59 729 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 PNPP00491 289 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 CNR1P21554 472 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 NFATC3Q12968 1075 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 MARCH8Q5T0T0 291 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 KCTD11Q693B1 232 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 NPTNQ9Y639 398 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 LOC102723971A0A1B0GUV8 181 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 ANTXRLA6NF34 631 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 GALR3O60755 368 aaPredicted RBP10.56□□□□□ -0.72
PTPN4-201ENST00000263708 IGHV3-9P01782 118 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 OR4F5Q8NH21 305 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 FYTTD1Q96QD9 318 aaKnown RBP10.56□□□□□ -0.72
PTPN4-201ENST00000263708 OR4F4Q96R69 305 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 PIGQQ9BRB3 760 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 WASH6PQ9NQA3 447 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 TAAR2Q9P1P5 351 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 GPR32O75388 356 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 SNHG28P0DPA3 235 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 PIPP12273 146 aaPredicted RBP10.56□□□□□ -0.72
PTPN4-201ENST00000263708 FDXRP22570 491 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 S100A4P26447 101 aaKnown RBP10.56□□□□□ -0.72
PTPN4-201ENST00000263708 ZNF425Q6IV72 752 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 PRR27Q6MZM9 219 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 OR51A4Q8NGJ6 313 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 OR51A2Q8NGJ7 313 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 KIRREL1Q96J84 757 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 UFSP2Q9NUQ7 469 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 XRN1Q8IZH2 1706 aaKnown RBP10.56□□□□□ -0.72
PTPN4-201ENST00000263708 CEBPBP17676 345 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 CD38P28907 300 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 GPR12P47775 334 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 RGRP47804 291 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 NEIL2Q969S2 332 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 SUMO1P63165 101 aaKnown RBP10.56□□□□□ -0.72
PTPN4-201ENST00000263708 HTRA4P83105 476 aaPredicted RBP10.56□□□□□ -0.72
PTPN4-201ENST00000263708 PLXDC2Q6UX71 529 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 C1orf87Q8N0U7 546 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 RLN3Q8WXF3 142 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 C14orf79Q96F83 325 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 TRMT61AQ96FX7 289 aaKnown RBP10.56□□□□□ -0.72
PTPN4-201ENST00000263708 ARHGAP39Q9C0H5 1083 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 GAL3ST2Q9H3Q3 398 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 ACSS1Q9NUB1 689 aaPredicted RBP10.56□□□□□ -0.72
PTPN4-201ENST00000263708 LOC102724200A0A096LPH7 203 aaPredicted RBP10.55□□□□□ -0.72
PTPN4-201ENST00000263708 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 IGHV3-64DA0A0J9YX35 117 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 USF1P22415 310 aaPredicted RBP10.55□□□□□ -0.72
PTPN4-201ENST00000263708 CDK5R2Q13319 367 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 MRPL2Q5T653 305 aaKnown RBP10.55□□□□□ -0.72
PTPN4-201ENST00000263708 LINC00346Q8IVM7 164 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 TMEFF1Q8IYR6 380 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 GLIS1Q8NBF1 620 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 ZNF296Q8WUU4 475 aaPredicted RBP10.55□□□□□ -0.72
PTPN4-201ENST00000263708 ZNF597Q96LX8 424 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 DMAC2Q9NW81 257 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 ABCC6O95255 1503 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 RNASEK-C17orf49H0YIS7 233 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 OR2C1O95371 312 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 HTR2CP28335 458 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 RAB40BQ12829 278 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 ADAMTS16Q8TE57 1224 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 KIR2DS5A0A0G2JLQ3 304 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 A0A0G2JNG1 304 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 PRAMEF25A6NGN4 478 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 ZNF814B7Z6K7 855 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 KIR2DS3K7RE56 304 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 RAB40ALP0C0E4 278 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 BAMBIQ13145 260 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 KIR2DS5Q14953 304 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 TATDN3Q17R31 274 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 PRAMEF5Q5TYX0 476 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 PRAMEF6Q5VXH4 476 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 RAB40AQ8WXH6 277 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 NAGKQ9UJ70 344 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 ZNF264O43296 627 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 OR7C2O60412 319 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 SULT1A3P0DMM9 295 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 SULT1A4P0DMN0 295 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 CAMKMTQ7Z624 323 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 GPR32P1Q8NGA4 272 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 OR52D1Q9H346 318 aa10.55□□□□□ -0.72
PTPN4-201ENST00000263708 EXOSC3Q9NQT5 275 aaKnown RBP10.55□□□□□ -0.72
PTPN4-201ENST00000263708 MRPS2Q9Y399 296 aaKnown RBP10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms