RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 TGFBR3Q03167 851 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 ZFP36L1Q07352 338 aaKnown RBP10.5□□□□□ -0.73
VPS4A-201ENST00000254950 LSAMPQ13449 338 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 ACSM3Q53FZ2 586 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 UBE2UQ5VVX9 321 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 SLC16A9Q7RTY1 509 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 BBS1Q8NFJ9 593 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 NANOS1Q8WY41 292 aaKnown RBP10.5□□□□□ -0.73
VPS4A-201ENST00000254950 RPL3LQ92901 407 aaKnown RBP10.5□□□□□ -0.73
VPS4A-201ENST00000254950 SPTSSAQ969W0 71 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 DHRS1Q96LJ7 313 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 C1orf198Q9H425 327 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 KLHL13Q9P2N7 655 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 NOSIPQ9Y314 301 aaKnown RBP10.5□□□□□ -0.73
VPS4A-201ENST00000254950 CMAHPQ9Y471 501 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 MKRN2OSH3BPM6 223 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 J3QRK9 145 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 CXCL13O43927 109 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 APEHP13798 732 aaKnown RBP10.5□□□□□ -0.73
VPS4A-201ENST00000254950 RFC3P40938 356 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 RNASE12Q5GAN4 147 aaKnown RBP10.5□□□□□ -0.73
VPS4A-201ENST00000254950 NANOGP1Q8N7R0 232 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 CPNE2Q96FN4 548 aaPredicted RBP10.5□□□□□ -0.73
VPS4A-201ENST00000254950 ZNF700Q9H0M5 742 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 SLC26A1Q9H2B4 701 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 RYDENQ9NUL5 291 aaKnown RBP10.5□□□□□ -0.73
VPS4A-201ENST00000254950 XIRP2A4UGR9 3374 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 TECTAO75443 2155 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 FAM240BA0A1B0GVZ2 78 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 IMPA2O14732 288 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 ZNF208O43345 1280 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 FBXO45P0C2W1 286 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 RAB3BP20337 219 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 ENTPD1P49961 510 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 PITPNAQ00169 270 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 TOMM34Q15785 309 aaPredicted RBP10.5□□□□□ -0.73
VPS4A-201ENST00000254950 TMEM205Q6UW68 189 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 ARSKQ6UWY0 536 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 ZNF101Q8IZC7 436 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 TMEM99Q8N816 258 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 NDNFQ8TB73 568 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 NKD1Q969G9 470 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 OXGR1Q96P68 337 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 SMURF1Q9HCE7 757 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 SEMA5BQ9P283 1151 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 REV1Q9UBZ9 1251 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 IGLV3-12A0A075B6K2 115 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 LINC01387J3KSC0 135 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 ATE1O95260 518 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 GABRA5P31644 462 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 SIRPAP78324 504 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 MYBPHQ13203 477 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 DCAF10Q5QP82 559 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 FAM198BQ6UWH4 519 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 TMPPEQ6ZT21 453 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 GPR155Q7Z3F1 870 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 OR8D4Q8NGM9 314 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 MAN2C1Q9NTJ4 1040 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 ICAM5Q9UMF0 924 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 COA3Q9Y2R0 106 aaPredicted RBP10.49□□□□□ -0.73
VPS4A-201ENST00000254950 IGHV1-45A0A0A0MS14 117 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 TRAV17A0A0B4J275 112 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 ZC3H12DA2A288 527 aaKnown RBP10.49□□□□□ -0.73
VPS4A-201ENST00000254950 OIP5O43482 229 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 SELENOFO60613 162 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 CD59P13987 128 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 RPS4Y1P22090 263 aaKnown RBP10.49□□□□□ -0.73
VPS4A-201ENST00000254950 FAUP35544 74 aaKnown RBP10.49□□□□□ -0.73
VPS4A-201ENST00000254950 FAM189A2Q15884 450 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 TMEM244Q5VVB8 128 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 DESI1Q6ICB0 168 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 LRRN1Q6UXK5 716 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 THSD4Q6ZMP0 1018 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 OR13C3Q8NGS6 347 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 RHNO1Q9BSD3 238 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 MED29Q9NX70 200 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 PAQR5Q9NXK6 330 aaPredicted RBP10.49□□□□□ -0.73
VPS4A-201ENST00000254950 KLHL9Q9P2J3 617 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 KCNE5Q9UJ90 142 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 TMEM269A0A1B0GVZ9 245 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 PRSS37A4D1T9 235 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 CCDC182A6NF36 153 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 F5H5K5 113 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 GABARAPO95166 117 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 RECKO95980 971 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 ERCC1P07992 297 aaPredicted RBP10.49□□□□□ -0.73
VPS4A-201ENST00000254950 LIPAP38571 399 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 ETV1P50549 477 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 MLF1P58340 268 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 PCBD1P61457 104 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 PLET1Q6UQ28 207 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 COX15Q7KZN9 410 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 SAMD12Q8N8I0 201 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 ACOT12Q8WYK0 555 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 DEFB127Q9H1M4 99 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 FGF20Q9NP95 211 aaPredicted RBP10.49□□□□□ -0.73
VPS4A-201ENST00000254950 SLC22A11Q9NSA0 550 aa10.49□□□□□ -0.73
VPS4A-201ENST00000254950 A0A1B0GVG6 124 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 DLGAP1O14490 977 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 SYT7O43581 403 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms