RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 UCKL1Q9NWZ5 548 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 SH2B3Q9UQQ2 575 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 TRAPPC4Q9Y296 219 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.46□□□□□ -0.41
LDLR-201ENST00000252444 A6NLC8 198 aa12.46□□□□□ -0.41
LDLR-201ENST00000252444 MFAP5Q13361 173 aa12.46□□□□□ -0.41
LDLR-201ENST00000252444 ACSM3Q53FZ2 586 aa12.46□□□□□ -0.41
LDLR-201ENST00000252444 STPG1Q5TH74 334 aa12.46□□□□□ -0.41
LDLR-201ENST00000252444 WDR53Q7Z5U6 358 aaPredicted RBP12.46□□□□□ -0.41
LDLR-201ENST00000252444 OR51A2Q8NGJ7 313 aa12.46□□□□□ -0.41
LDLR-201ENST00000252444 SNAPC3Q92966 411 aa12.46□□□□□ -0.41
LDLR-201ENST00000252444 DCBLD2Q96PD2 775 aa12.46□□□□□ -0.41
LDLR-201ENST00000252444 TMEM185BQ9H7F4 350 aa12.46□□□□□ -0.41
LDLR-201ENST00000252444 PTTG1O95997 202 aa12.46□□□□□ -0.41
LDLR-201ENST00000252444 STOMP27105 288 aa12.46□□□□□ -0.41
LDLR-201ENST00000252444 RBMXP38159 391 aaKnown RBP12.46□□□□□ -0.41
LDLR-201ENST00000252444 ZNF133P52736 654 aaPredicted RBP12.46□□□□□ -0.41
LDLR-201ENST00000252444 ALKBH1Q13686 389 aaKnown RBP12.46□□□□□ -0.41
LDLR-201ENST00000252444 DEFB109BQ30KR1 87 aa12.46□□□□□ -0.41
LDLR-201ENST00000252444 ZNF813Q6ZN06 617 aa12.46□□□□□ -0.41
LDLR-201ENST00000252444 LILRA2Q8N149 483 aa12.46□□□□□ -0.41
LDLR-201ENST00000252444 DNTTIP1Q9H147 329 aa12.46□□□□□ -0.41
LDLR-201ENST00000252444 HSPA12AO43301 675 aa12.46□□□□□ -0.42
LDLR-201ENST00000252444 HEXAP06865 529 aa12.46□□□□□ -0.42
LDLR-201ENST00000252444 AMY2BP19961 511 aa12.46□□□□□ -0.42
LDLR-201ENST00000252444 ABCD3P28288 659 aa12.46□□□□□ -0.42
LDLR-201ENST00000252444 SQSTM1Q13501 440 aa12.46□□□□□ -0.42
LDLR-201ENST00000252444 UBE2UQ5VVX9 321 aa12.46□□□□□ -0.42
LDLR-201ENST00000252444 OR56B1Q8NGI3 324 aa12.46□□□□□ -0.42
LDLR-201ENST00000252444 OR52H1Q8NGJ2 320 aa12.46□□□□□ -0.42
LDLR-201ENST00000252444 ZNF700Q9H0M5 742 aa12.46□□□□□ -0.42
LDLR-201ENST00000252444 FGF20Q9NP95 211 aaPredicted RBP12.46□□□□□ -0.42
LDLR-201ENST00000252444 CLEC4AQ9UMR7 237 aa12.46□□□□□ -0.42
LDLR-201ENST00000252444 CCL27Q9Y4X3 112 aa12.46□□□□□ -0.42
LDLR-201ENST00000252444 NOTOA8MTQ0 251 aa12.46□□□□□ -0.42
LDLR-201ENST00000252444 LIPCP11150 499 aa12.46□□□□□ -0.42
LDLR-201ENST00000252444 LAP3P28838 519 aa12.46□□□□□ -0.42
LDLR-201ENST00000252444 IST1P53990 364 aa12.46□□□□□ -0.42
LDLR-201ENST00000252444 PCBP3P57721 371 aaKnown RBP12.46□□□□□ -0.42
LDLR-201ENST00000252444 GALEQ14376 348 aa12.46□□□□□ -0.42
LDLR-201ENST00000252444 ZFP69Q49AA0 526 aa12.46□□□□□ -0.42
LDLR-201ENST00000252444 TCTN3Q6NUS6 607 aa12.46□□□□□ -0.42
LDLR-201ENST00000252444 EGLN3Q9H6Z9 239 aa12.46□□□□□ -0.42
LDLR-201ENST00000252444 B3GNT3Q9Y2A9 372 aa12.46□□□□□ -0.42
LDLR-201ENST00000252444 OR6C6A6NF89 314 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 ARPC3O15145 178 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 TO15178 435 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 TP53I3Q53FA7 332 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 ACER2Q5QJU3 275 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 SPERTQ8NA61 448 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 ADPRHL1Q8NDY3 354 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 ZNF501Q96CX3 271 aaPredicted RBP12.45□□□□□ -0.42
LDLR-201ENST00000252444 EGLN1Q9GZT9 426 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 CTSFQ9UBX1 484 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 A0A087WUU8 490 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 RNF212BA8MTL3 300 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 CYR61O00622 381 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 B4GAT1O43505 415 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 RAC1P63000 192 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 LMF1Q96S06 567 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 FNDC1Q4ZHG4 1894 aaPredicted RBP12.45□□□□□ -0.42
LDLR-201ENST00000252444 LRRC30A6NM36 301 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 TRAPPC2LH3BP13 241 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 TMEM225BP0DP42 221 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 RAC2P15153 192 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 CDK2P24941 298 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 BDKRB2P30411 391 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 PPP5CP53041 499 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 TAS2R46P59540 309 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 SYT6Q5T7P8 510 aaPredicted RBP12.45□□□□□ -0.42
LDLR-201ENST00000252444 FCRLAQ7L513 359 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 ENTHD1Q8IYW4 607 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 ANKRD9Q96BM1 317 aaPredicted RBP12.45□□□□□ -0.42
LDLR-201ENST00000252444 SPACA1Q9HBV2 294 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 CPNE5Q9HCH3 593 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 TNFRSF12AQ9NP84 129 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 PSMD9O00233 223 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 CCNKO75909 580 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 OR8G3PP0DMU2 310 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 FOXC1Q12948 553 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 NFATC3Q12968 1075 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 EBPQ15125 230 aaKnown RBP12.45□□□□□ -0.42
LDLR-201ENST00000252444 SPIN3Q5JUX0 258 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 TMEM236Q5W0B7 351 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 KCNG3Q8TAE7 436 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 APOBEC4Q8WW27 367 aaKnown RBP12.45□□□□□ -0.42
LDLR-201ENST00000252444 NRG4Q8WWG1 115 aa12.45□□□□□ -0.42
LDLR-201ENST00000252444 NUP205Q92621 2012 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 CLIC3O95833 236 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 PRSS3P35030 304 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 AP2S1P53680 142 aaPredicted RBP12.44□□□□□ -0.42
LDLR-201ENST00000252444 PRAMEF17Q5VTA0 474 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 OR7E24Q6IFN5 339 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 DEGS2Q6QHC5 323 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 SERPINA12Q8IW75 414 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 SLC22A18ASQ8N1D0 253 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 SLC22A24Q8N4F4 322 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 COQ8AQ8NI60 647 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 SPIN2AQ99865 258 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 SPIN2BQ9BPZ2 258 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms