RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 NAGAP17050 411 aa12.52□□□□□ -0.41
SF3A1-201ENST00000215793 THBS3P49746 956 aa12.52□□□□□ -0.41
SF3A1-201ENST00000215793 ZNF92Q03936 586 aa12.52□□□□□ -0.41
SF3A1-201ENST00000215793 AFMIDQ63HM1 303 aa12.52□□□□□ -0.41
SF3A1-201ENST00000215793 SIT1Q9Y3P8 196 aa12.52□□□□□ -0.41
SF3A1-201ENST00000215793 ARPC4-TTLL3A0A0A6YYG9 625 aa12.52□□□□□ -0.41
SF3A1-201ENST00000215793 E9PI62 339 aa12.52□□□□□ -0.41
SF3A1-201ENST00000215793 ATP1B1P05026 303 aa12.52□□□□□ -0.41
SF3A1-201ENST00000215793 KCNJ8Q15842 424 aa12.52□□□□□ -0.41
SF3A1-201ENST00000215793 SLC7A5P1Q8MH63 180 aa12.52□□□□□ -0.41
SF3A1-201ENST00000215793 ZNF511Q8NB15 262 aa12.52□□□□□ -0.41
SF3A1-201ENST00000215793 TUBB1Q9H4B7 451 aa12.52□□□□□ -0.41
SF3A1-201ENST00000215793 COPS3Q9UNS2 423 aa12.52□□□□□ -0.41
SF3A1-201ENST00000215793 SLC5A10A0PJK1 596 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 TARM1B6A8C7 271 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 KRBOX1C9JBD0 128 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 C17orf112F2Z3M2 114 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 PTBP1P26599 531 aaKnown RBP eCLIP12.51□□□□□ -0.41
SF3A1-201ENST00000215793 ECI1P42126 302 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 RBMS3Q6XE24 437 aaKnown RBP12.51□□□□□ -0.41
SF3A1-201ENST00000215793 ANKRD9Q96BM1 317 aaPredicted RBP12.51□□□□□ -0.41
SF3A1-201ENST00000215793 TAS2R16Q9NYV7 291 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 KCND3Q9UK17 655 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 FBXL2Q9UKC9 423 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 OR52A1Q9UKL2 312 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 RAB22AQ9UL26 194 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 H7C1Q1 480 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 PRAMEF4O60810 478 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 MCCD1P59942 119 aaPredicted RBP12.51□□□□□ -0.41
SF3A1-201ENST00000215793 WDR88Q6ZMY6 472 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 ZNF813Q6ZN06 617 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 GRINAQ7Z429 371 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 FAM109AQ8N4B1 249 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 LILRA3Q8N6C8 439 aaPredicted RBP12.51□□□□□ -0.41
SF3A1-201ENST00000215793 GJC3Q8NFK1 279 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 SGPP1Q9BX95 441 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 GPR55Q9Y2T6 319 aaPredicted RBP12.51□□□□□ -0.41
SF3A1-201ENST00000215793 KNL1Q8NG31 2342 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 TIMM8AO60220 97 aaPredicted RBP12.51□□□□□ -0.41
SF3A1-201ENST00000215793 PRKRAO75569 313 aaKnown RBP12.51□□□□□ -0.41
SF3A1-201ENST00000215793 SCAF4O95104 1147 aaKnown RBP12.51□□□□□ -0.41
SF3A1-201ENST00000215793 MTHFD2P13995 350 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 MMP11P24347 488 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 CD27P26842 260 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 ACVR1Q04771 509 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 MLF2Q15773 248 aaPredicted RBP12.51□□□□□ -0.41
SF3A1-201ENST00000215793 CCSMST1Q4G0I0 132 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 ESCO2Q56NI9 601 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 OR52W1Q6IF63 320 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 ADGRE4PQ86SQ3 457 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 TMEM178AQ8NBL3 297 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 DMBX1Q8NFW5 382 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 LILRB4Q8NHJ6 448 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 SECTM1Q8WVN6 248 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 FAM3DQ96BQ1 224 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 UHRF2Q96PU4 802 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 A0A1B0GX78 115 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 ZNF587BE7ETH6 402 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 AP1G1O43747 822 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 CHRM2P08172 466 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 ZNF728P0DKX0 622 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 C1orf140Q5VVS0 124 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 UCN3Q969E3 161 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 CPNE4Q96A23 557 aaPredicted RBP12.51□□□□□ -0.41
SF3A1-201ENST00000215793 C1QTNF3Q9BXJ4 246 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 CXCL16Q9H2A7 254 aa12.51□□□□□ -0.41
SF3A1-201ENST00000215793 TIAM2Q8IVF5 1701 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 SCN11AQ9UI33 1791 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 LOC100289279A0A1B0GTE1 492 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 P2RY10O00398 339 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 HMGA1P17096 107 aaKnown RBP12.5□□□□□ -0.41
SF3A1-201ENST00000215793 BCKDHBP21953 392 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 TLE4Q04727 773 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 HMGN3Q15651 99 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 ELAVL1Q15717 326 aaKnown RBP12.5□□□□□ -0.41
SF3A1-201ENST00000215793 PLPP5Q8NEB5 264 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 OR5D18Q8NGL1 313 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 SLC23A2Q9UGH3 650 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 TMEM129A0AVI4 362 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 NUPL2O15504 423 aaKnown RBP12.5□□□□□ -0.41
SF3A1-201ENST00000215793 LIM2P55344 173 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 GRB2P62993 217 aaKnown RBP12.5□□□□□ -0.41
SF3A1-201ENST00000215793 H1FNTQ75WM6 255 aaPredicted RBP12.5□□□□□ -0.41
SF3A1-201ENST00000215793 SYT9Q86SS6 491 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 BTF3L4Q96K17 158 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 LYSMD1Q96S90 227 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 ARPC5LQ9BPX5 153 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 ABHD6Q9BV23 337 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 SAMD10Q9BYL1 202 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 HIPK2Q9H2X6 1198 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 OLFM2O95897 454 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 CCR9P51686 369 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 IHHQ14623 411 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 EXT1Q16394 746 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 ZNF74Q16587 644 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 TMEM31Q5JXX7 168 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 ALKAL2Q6UX46 152 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 ZNF836Q6ZNA1 936 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 PRICKLE2Q7Z3G6 844 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 OR13H1Q8NG92 308 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms