RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 MMAAQ8IVH4 418 aaKnown RBP0.14□□□□□ -2.39
VPS35-212ENST00000640313 RIMKLAQ8IXN7 391 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 UBALD2Q8IYN6 164 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 PGAM4Q8N0Y7 254 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 TTC5Q8N0Z6 440 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 CLEC4FQ8N1N0 589 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 ATP6V0D2Q8N8Y2 350 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 FAM133AQ8N9E0 248 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 SPANXA2-OT1Q8N9U9 137 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 NECAP1Q8NC96 275 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 OR10A7Q8NGE5 316 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 OR10G4Q8NGN3 311 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 OR1N2Q8NGR9 330 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 OR2G3Q8NGZ4 309 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 CIRBP-AS1Q8TBR5 109 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 FANK1Q8TC84 345 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 MCOLN3Q8TDD5 553 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 GIPC3Q8TF64 312 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 TCTEX1D2Q8WW35 142 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 HTR3CQ8WXA8 447 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 RGP1Q92546 391 aaPredicted RBP0.14□□□□□ -2.39
VPS35-212ENST00000640313 RAPGEF5Q92565 580 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 SMARCD2Q92925 531 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 MYLPFQ96A32 169 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 EXOSC8Q96B26 276 aaKnown RBP0.14□□□□□ -2.39
VPS35-212ENST00000640313 PDXPQ96GD0 296 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 SMIM10Q96HG1 83 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 NARS2Q96I59 477 aaKnown RBP0.14□□□□□ -2.39
VPS35-212ENST00000640313 OR10C1Q96KK4 312 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 CCDC43Q96MW1 224 aaKnown RBP0.14□□□□□ -2.39
VPS35-212ENST00000640313 FAM111AQ96PZ2 611 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 SECISBP2Q96T21 854 aaKnown RBP0.14□□□□□ -2.39
VPS35-212ENST00000640313 RNF2Q99496 336 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 RIT2Q99578 217 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 GPA33Q99795 319 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 FOXC2Q99958 501 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 LZTS2Q9BRK4 669 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 RIOK1Q9BRS2 568 aaKnown RBP0.14□□□□□ -2.39
VPS35-212ENST00000640313 NDFIP1Q9BT67 221 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 NAT9Q9BTE0 207 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 EDEM2Q9BV94 578 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 FAIM2Q9BWQ8 316 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 GSDMCQ9BYG8 508 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 MRPL37Q9BZE1 423 aaKnown RBP0.14□□□□□ -2.39
VPS35-212ENST00000640313 TMEM117Q9H0C3 514 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 RAB17Q9H0T7 212 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 DPH5Q9H2P9 285 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 IFI27L2Q9H2X8 130 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 RBKSQ9H477 322 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 SAV1Q9H4B6 383 aaPredicted RBP0.14□□□□□ -2.39
VPS35-212ENST00000640313 RANBP3Q9H6Z4 567 aaPredicted RBP0.14□□□□□ -2.39
VPS35-212ENST00000640313 UBE2ZQ9H832 354 aaPredicted RBP0.14□□□□□ -2.39
VPS35-212ENST00000640313 YY1AP1Q9H869 796 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 ELOVL3Q9HB03 270 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 ZFP14Q9HCL3 533 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 TM9SF3Q9HD45 589 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 UFSP2Q9NUQ7 469 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 SMOXQ9NWM0 555 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 GIN1Q9NXP7 522 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 AATFQ9NY61 560 aaKnown RBP eCLIP0.14□□□□□ -2.39
VPS35-212ENST00000640313 CALYQ9NYX4 217 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP0.14□□□□□ -2.39
VPS35-212ENST00000640313 SPATA7Q9P0W8 599 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 PIPOXQ9P0Z9 390 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 ZNRD1Q9P1U0 126 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 DUX4Q9UBX2 424 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 SEC14L3Q9UDX4 400 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 PCSK1NQ9UHG2 260 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 PSG8Q9UQ74 426 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 MEMO1Q9Y316 297 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 RPL36Q9Y3U8 105 aaKnown RBP0.14□□□□□ -2.39
VPS35-212ENST00000640313 HEBP2Q9Y5Z4 205 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 SLC25A15Q9Y619 301 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 CARMIL1Q5VZK9 1371 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 BAHCC1Q9P281 2608 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 ANKRD12Q6UB98 2062 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 CLSPNQ9HAW4 1339 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 PTPRTO14522 1441 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 ADAMTS13Q76LX8 1427 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 IGLV3-12A0A075B6K2 115 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 IGHV3OR16-8A0A075B7F1 116 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 A0A1B0GWJ7 208 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 A0A1W2PPE3 182 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 TCRBV9S1A1TA0A576 114 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 C7orf66A4D0T2 115 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 PRSS37A4D1T9 235 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 MBLAC1A4D2B0 266 aaPredicted RBP0.13□□□□□ -2.39
VPS35-212ENST00000640313 KRT87PA6NCN2 255 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 TRIM64A6NGJ6 449 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 TRIM64BA6NI03 449 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 ZNF850A8MQ14 1090 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 C16orf90A8MZG2 172 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 INS-IGF2F8WCM5 200 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 LGALS9O00182 355 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 BPY2O14599 106 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 XPO1O14980 1071 aaKnown RBP0.13□□□□□ -2.39
VPS35-212ENST00000640313 RAD51BO15315 384 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 RRP8O43159 456 aaKnown RBP0.13□□□□□ -2.39
VPS35-212ENST00000640313 TBX19O60806 448 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 OR7A10O76100 309 aa0.13□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms