RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 LRP6O75581 1613 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 TOGARAM1Q9Y4F4 1720 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 HCRTR1O43613 425 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 HPRP00739 348 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 MT-ATP6P00846 226 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 IGFBP1P08833 259 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-217ENST00000637988 FPR2P25090 351 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 HOXD9P28356 352 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-217ENST00000637988 SLC14A1Q13336 389 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 SQSTM1Q13501 440 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 FHL5Q5TD97 284 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 SFXN4Q6P4A7 337 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 CLEC14AQ86T13 490 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 RNF113BQ8IZP6 322 aaKnown RBP5.67□□□□□ -1.5
SCN1A-217ENST00000637988 BPIFB2Q8N4F0 458 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 ACBD4Q8NC06 268 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 SLC35B2Q8TB61 432 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 ST8SIA4Q92187 359 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 RPL3LQ92901 407 aaKnown RBP5.67□□□□□ -1.5
SCN1A-217ENST00000637988 C1QTNF2Q9BXJ5 285 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 IL26Q9NPH9 171 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 HEYLQ9NQ87 328 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-217ENST00000637988 THAP10Q9P2Z0 257 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-217ENST00000637988 HEATR1Q9H583 2144 aaKnown RBP5.67□□□□□ -1.5
SCN1A-217ENST00000637988 C2CD4DB7Z1M9 353 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 H3BSA7 217 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 PEX2P28328 305 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 SHEQ5VZ18 495 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 GPRIN1Q7Z2K8 1008 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 TTC9BQ8N6N2 239 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 TMEM104Q8NE00 496 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 OR13H1Q8NG92 308 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 OR5D16Q8NGK9 328 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 CANT1Q8WVQ1 401 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 RND1Q92730 232 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 ASB16Q96NS5 453 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 GNRHR2Q96P88 292 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 SPACA1Q9HBV2 294 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 LTB4R2Q9NPC1 389 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 ZNF71Q9NQZ8 489 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-217ENST00000637988 C5AR2Q9P296 337 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 TAF1P21675 1872 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 AHDC1Q5TGY3 1603 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-217ENST00000637988 TRGV10A0A0A0MS01 117 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 TRGV5A0A0B4J1U4 118 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 H0YIG0 161 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 CD97P48960 835 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 OR10A3P58181 314 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 NCS1P62166 190 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 ZNF674Q2M3X9 581 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 DPY19L2P1Q6NXN4 242 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 TSSK4Q6SA08 328 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 SSX8Q7RTT4 187 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 ZNF551Q7Z340 670 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-217ENST00000637988 YRDCQ86U90 279 aaKnown RBP5.67□□□□□ -1.5
SCN1A-217ENST00000637988 OR5AS1Q8N127 324 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 GABRG1Q8N1C3 465 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 FRMD1Q8N878 549 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 BPIFCQ8NFQ6 507 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 RAB1CQ92928 201 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 ZMYND19Q96E35 227 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-217ENST00000637988 MFFQ9GZY8 342 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 TCEAL2Q9H3H9 227 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-217ENST00000637988 TNFRSF19Q9NS68 423 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 MOKQ9UQ07 419 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 MDC1Q14676 2089 aaKnown RBP5.67□□□□□ -1.5
SCN1A-217ENST00000637988 TIAM2Q8IVF5 1701 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 HS3ST1O14792 307 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 ETS2P15036 469 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 CEACAM3P40198 252 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 PRRX1P54821 245 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 IL13RA1P78552 427 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 MOGSQ13724 837 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 RNPS1Q15287 305 aaKnown RBP5.67□□□□□ -1.5
SCN1A-217ENST00000637988 TECRLQ5HYJ1 363 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 HES5Q5TA89 166 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 PM20D1Q6GTS8 502 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 OR7E24Q6IFN5 339 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 LSRQ86X29 649 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-217ENST00000637988 SDR9C7Q8NEX9 313 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 ZBTB8AQ96BR9 441 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 TAMM41Q96BW9 452 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 DPH3Q96FX2 82 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 PLEKHF2Q9H8W4 249 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 CRLF2Q9HC73 371 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 NPFFR2Q9Y5X5 522 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 TMED7-TICAM2A0A0A6YYA0 188 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 TUBAL3A6NHL2 446 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 ITM2AO43736 263 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 MGST1P10620 155 aaKnown RBP5.67□□□□□ -1.5
SCN1A-217ENST00000637988 AADACP22760 399 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 WNT7BP56706 349 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 GAB1Q13480 694 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 RTP5Q14D33 572 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 B3GNTL1Q67FW5 361 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-217ENST00000637988 TMEM139Q8IV31 216 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 OR5R1Q8NH85 324 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 SYNPRQ8TBG9 265 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 CD200R1Q8TD46 325 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 SECTM1Q8WVN6 248 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms