RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 RAB39AQ14964 217 aa18.01■□□□□ 0.47
CLN3-250ENST00000636839 MFSD13AQ14CX5 517 aa18.01■□□□□ 0.47
CLN3-250ENST00000636839 RPRD1BQ9NQG5 326 aaKnown RBP18.01■□□□□ 0.47
CLN3-250ENST00000636839 B4GALT7Q9UBV7 327 aa18.01■□□□□ 0.47
CLN3-250ENST00000636839 KLHL21Q9UJP4 597 aa18.01■□□□□ 0.47
CLN3-250ENST00000636839 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP18.01■□□□□ 0.47
CLN3-250ENST00000636839 ATMQ13315 3056 aa18.01■□□□□ 0.47
CLN3-250ENST00000636839 IGF2RP11717 2491 aa18■□□□□ 0.47
CLN3-250ENST00000636839 PRRC2CQ9Y520 2896 aaKnown RBP18■□□□□ 0.47
CLN3-250ENST00000636839 EIF1AYO14602 144 aaKnown RBP18■□□□□ 0.47
CLN3-250ENST00000636839 PTHP01270 115 aa18■□□□□ 0.47
CLN3-250ENST00000636839 APEHP13798 732 aaKnown RBP18■□□□□ 0.47
CLN3-250ENST00000636839 ENPP1P22413 925 aa18■□□□□ 0.47
CLN3-250ENST00000636839 ACVR1BP36896 505 aa18■□□□□ 0.47
CLN3-250ENST00000636839 ID4P47928 161 aa18■□□□□ 0.47
CLN3-250ENST00000636839 CLK1P49759 484 aaKnown RBP18■□□□□ 0.47
CLN3-250ENST00000636839 POU3F1Q03052 451 aaPredicted RBP18■□□□□ 0.47
CLN3-250ENST00000636839 GPAT4Q86UL3 456 aa18■□□□□ 0.47
CLN3-250ENST00000636839 ARIH2OSQ8N7S6 290 aa18■□□□□ 0.47
CLN3-250ENST00000636839 OR51G2Q8NGK0 314 aa18■□□□□ 0.47
CLN3-250ENST00000636839 TMEM80Q96HE8 168 aa18■□□□□ 0.47
CLN3-250ENST00000636839 KLHL15Q96M94 604 aa18■□□□□ 0.47
CLN3-250ENST00000636839 DEFB127Q9H1M4 99 aa18■□□□□ 0.47
CLN3-250ENST00000636839 KLHL13Q9P2N7 655 aa18■□□□□ 0.47
CLN3-250ENST00000636839 TRAPPC4Q9Y296 219 aa18■□□□□ 0.47
CLN3-250ENST00000636839 B3GALT5Q9Y2C3 310 aa18■□□□□ 0.47
CLN3-250ENST00000636839 RAXQ9Y2V3 346 aa18■□□□□ 0.47
CLN3-250ENST00000636839 LIPGQ9Y5X9 500 aa18■□□□□ 0.47
CLN3-250ENST00000636839 NCOR2Q9Y618 2525 aa17.99■□□□□ 0.47
CLN3-250ENST00000636839 H3BSA7 217 aa17.99■□□□□ 0.47
CLN3-250ENST00000636839 MRPL3P09001 348 aaKnown RBP17.99■□□□□ 0.47
CLN3-250ENST00000636839 PIPP12273 146 aaPredicted RBP17.99■□□□□ 0.47
CLN3-250ENST00000636839 PYCR1P32322 319 aa17.99■□□□□ 0.47
CLN3-250ENST00000636839 RPL27P61353 136 aaKnown RBP17.99■□□□□ 0.47
CLN3-250ENST00000636839 ZP4Q12836 540 aa17.99■□□□□ 0.47
CLN3-250ENST00000636839 IRF3Q14653 427 aa17.99■□□□□ 0.47
CLN3-250ENST00000636839 NHLRC1Q6VVB1 395 aa17.99■□□□□ 0.47
CLN3-250ENST00000636839 JAZF1Q86VZ6 243 aa17.99■□□□□ 0.47
CLN3-250ENST00000636839 ZNF519Q8TB69 540 aa17.99■□□□□ 0.47
CLN3-250ENST00000636839 RFKQ969G6 155 aa17.99■□□□□ 0.47
CLN3-250ENST00000636839 ZMYND19Q96E35 227 aaPredicted RBP17.99■□□□□ 0.47
CLN3-250ENST00000636839 EMC6Q9BV81 110 aa17.99■□□□□ 0.47
CLN3-250ENST00000636839 NMNAT2Q9BZQ4 307 aa17.99■□□□□ 0.47
CLN3-250ENST00000636839 TSPAN10Q9H1Z9 355 aaPredicted RBP17.99■□□□□ 0.47
CLN3-250ENST00000636839 TXNIPQ9H3M7 391 aa17.99■□□□□ 0.47
CLN3-250ENST00000636839 SRA1Q9HD15 236 aaKnown RBP17.99■□□□□ 0.47
CLN3-250ENST00000636839 ZNF407Q9C0G0 2248 aa17.99■□□□□ 0.47
CLN3-250ENST00000636839 FZD7O75084 574 aa17.99■□□□□ 0.47
CLN3-250ENST00000636839 GSTT1P30711 240 aa17.99■□□□□ 0.47
CLN3-250ENST00000636839 ETV1P50549 477 aa17.99■□□□□ 0.47
CLN3-250ENST00000636839 GP2P55259 537 aaKnown RBP17.99■□□□□ 0.47
CLN3-250ENST00000636839 HSF1Q00613 529 aa17.99■□□□□ 0.47
CLN3-250ENST00000636839 ARMC4Q5T2S8 1044 aa17.99■□□□□ 0.47
CLN3-250ENST00000636839 PLXDC2Q6UX71 529 aa17.99■□□□□ 0.47
CLN3-250ENST00000636839 B3GNT6Q6ZMB0 384 aa17.99■□□□□ 0.47
CLN3-250ENST00000636839 TRILQ7L0X0 811 aa17.99■□□□□ 0.47
CLN3-250ENST00000636839 PM20D2Q8IYS1 436 aa17.99■□□□□ 0.47
CLN3-250ENST00000636839 TMEM178AQ8NBL3 297 aa17.99■□□□□ 0.47
CLN3-250ENST00000636839 PCDHGB1Q9Y5G3 927 aa17.99■□□□□ 0.47
CLN3-250ENST00000636839 PMS2P2O95744 297 aa17.98■□□□□ 0.47
CLN3-250ENST00000636839 JUNBP17275 347 aaPredicted RBP17.98■□□□□ 0.47
CLN3-250ENST00000636839 SPI1P17947 270 aa17.98■□□□□ 0.47
CLN3-250ENST00000636839 POU3F2P20265 443 aaPredicted RBP17.98■□□□□ 0.47
CLN3-250ENST00000636839 PAICSP22234 425 aaKnown RBP17.98■□□□□ 0.47
CLN3-250ENST00000636839 FKBP2P26885 142 aaKnown RBP17.98■□□□□ 0.47
CLN3-250ENST00000636839 CD79BP40259 229 aa17.98■□□□□ 0.47
CLN3-250ENST00000636839 SLC35A1P78382 337 aa17.98■□□□□ 0.47
CLN3-250ENST00000636839 H3F3AP84243 136 aa17.98■□□□□ 0.47
CLN3-250ENST00000636839 SRYQ05066 204 aa17.98■□□□□ 0.47
CLN3-250ENST00000636839 OTPQ5XKR4 325 aa17.98■□□□□ 0.47
CLN3-250ENST00000636839 GID4Q8IVV7 300 aa17.98■□□□□ 0.47
CLN3-250ENST00000636839 MUL1Q969V5 352 aa17.98■□□□□ 0.47
CLN3-250ENST00000636839 OR5M11Q96RB7 305 aa17.98■□□□□ 0.47
CLN3-250ENST00000636839 SYT4Q9H2B2 425 aa17.98■□□□□ 0.47
CLN3-250ENST00000636839 RERGLQ9H628 205 aa17.98■□□□□ 0.47
CLN3-250ENST00000636839 MRPS18AQ9NVS2 196 aaKnown RBP17.98■□□□□ 0.47
CLN3-250ENST00000636839 A0A1W2PRG6 482 aa17.98■□□□□ 0.47
CLN3-250ENST00000636839 CDK2AP1O14519 115 aa17.98■□□□□ 0.47
CLN3-250ENST00000636839 GPANK1O95872 356 aa17.98■□□□□ 0.47
CLN3-250ENST00000636839 HCCSP53701 268 aa17.98■□□□□ 0.47
CLN3-250ENST00000636839 HYAL4Q2M3T9 481 aa17.98■□□□□ 0.47
CLN3-250ENST00000636839 GPR139Q6DWJ6 353 aa17.98■□□□□ 0.47
CLN3-250ENST00000636839 TMEM225Q6GV28 225 aa17.98■□□□□ 0.47
CLN3-250ENST00000636839 SLC35D2Q76EJ3 337 aa17.98■□□□□ 0.47
CLN3-250ENST00000636839 PXKQ7Z7A4 578 aa17.98■□□□□ 0.47
CLN3-250ENST00000636839 OR6V1Q8N148 313 aa17.98■□□□□ 0.47
CLN3-250ENST00000636839 EXD3Q8N9H8 876 aa17.98■□□□□ 0.47
CLN3-250ENST00000636839 SYT14Q8NB59 555 aa17.98■□□□□ 0.47
CLN3-250ENST00000636839 ZNF845Q96IR2 970 aaPredicted RBP17.98■□□□□ 0.47
CLN3-250ENST00000636839 FOXN4Q96NZ1 517 aa17.98■□□□□ 0.47
CLN3-250ENST00000636839 CDCA4Q9BXL8 241 aa17.98■□□□□ 0.47
CLN3-250ENST00000636839 AQP7P3A6NL99 342 aa17.97■□□□□ 0.47
CLN3-250ENST00000636839 SNTNA6NMZ2 147 aa17.97■□□□□ 0.47
CLN3-250ENST00000636839 ADRB1P08588 477 aa17.97■□□□□ 0.47
CLN3-250ENST00000636839 RAB40BQ12829 278 aa17.97■□□□□ 0.47
CLN3-250ENST00000636839 LHFPL3Q86UP9 236 aa17.97■□□□□ 0.47
CLN3-250ENST00000636839 ADGRG7Q96K78 797 aa17.97■□□□□ 0.47
CLN3-250ENST00000636839 TBX5Q99593 518 aa17.97■□□□□ 0.47
CLN3-250ENST00000636839 ZNHIT1O43257 154 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 CXCL13O43927 109 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms