RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 MED29Q9NX70 200 aa13.95□□□□□ -0.18
CLN3-246ENST00000636228 NKIRAS1Q9NYS0 192 aa13.95□□□□□ -0.18
CLN3-246ENST00000636228 ARFGEF3Q5TH69 2177 aa13.95□□□□□ -0.18
CLN3-246ENST00000636228 A0A087WUJ7 227 aa13.94□□□□□ -0.18
CLN3-246ENST00000636228 ZNF99A8MXY4 864 aaPredicted RBP13.94□□□□□ -0.18
CLN3-246ENST00000636228 FZD7O75084 574 aa13.94□□□□□ -0.18
CLN3-246ENST00000636228 SERPINI2O75830 405 aa13.94□□□□□ -0.18
CLN3-246ENST00000636228 ARAFP10398 606 aa13.94□□□□□ -0.18
CLN3-246ENST00000636228 ETS2P15036 469 aa13.94□□□□□ -0.18
CLN3-246ENST00000636228 IFNGR1P15260 489 aa13.94□□□□□ -0.18
CLN3-246ENST00000636228 NQO1P15559 274 aaKnown RBP13.94□□□□□ -0.18
CLN3-246ENST00000636228 TCN1P20061 433 aaPredicted RBP13.94□□□□□ -0.18
CLN3-246ENST00000636228 GIFP27352 417 aa13.94□□□□□ -0.18
CLN3-246ENST00000636228 AQP1P29972 269 aa13.94□□□□□ -0.18
CLN3-246ENST00000636228 PRKAR1BP31321 381 aa13.94□□□□□ -0.18
CLN3-246ENST00000636228 FADDQ13158 208 aa13.94□□□□□ -0.18
CLN3-246ENST00000636228 CCNIQ14094 377 aa13.94□□□□□ -0.18
CLN3-246ENST00000636228 PAGE3Q5JUK9 113 aa13.94□□□□□ -0.18
CLN3-246ENST00000636228 GCNT6Q5T4J0 391 aa13.94□□□□□ -0.18
CLN3-246ENST00000636228 EPGNQ6UW88 154 aa13.94□□□□□ -0.18
CLN3-246ENST00000636228 CROCCP2Q86T23 111 aa13.94□□□□□ -0.18
CLN3-246ENST00000636228 FUNDC1Q8IVP5 155 aa13.94□□□□□ -0.18
CLN3-246ENST00000636228 ZNF786Q8N393 782 aa13.94□□□□□ -0.18
CLN3-246ENST00000636228 GOLGA6L1Q8N7Z2 621 aa13.94□□□□□ -0.18
CLN3-246ENST00000636228 LSMEM1Q8N8F7 131 aa13.94□□□□□ -0.18
CLN3-246ENST00000636228 UBASH3BQ8TF42 649 aa13.94□□□□□ -0.18
CLN3-246ENST00000636228 NEU4Q8WWR8 484 aaPredicted RBP13.94□□□□□ -0.18
CLN3-246ENST00000636228 SLC35B4Q969S0 331 aa13.94□□□□□ -0.18
CLN3-246ENST00000636228 MRPL37Q9BZE1 423 aaKnown RBP13.94□□□□□ -0.18
CLN3-246ENST00000636228 RAD21L1Q9H4I0 556 aa13.94□□□□□ -0.18
CLN3-246ENST00000636228 C12orf10Q9HB07 376 aa13.94□□□□□ -0.18
CLN3-246ENST00000636228 MOV10Q9HCE1 1003 aaKnown RBP13.94□□□□□ -0.18
CLN3-246ENST00000636228 B3GNT2Q9NY97 397 aa13.94□□□□□ -0.18
CLN3-246ENST00000636228 USH1CQ9Y6N9 552 aa13.94□□□□□ -0.18
CLN3-246ENST00000636228 TPST2O60704 377 aa13.93□□□□□ -0.18
CLN3-246ENST00000636228 BGLAPP02818 100 aa13.93□□□□□ -0.18
CLN3-246ENST00000636228 ERCC1P07992 297 aaPredicted RBP13.93□□□□□ -0.18
CLN3-246ENST00000636228 TACSTD2P09758 323 aa13.93□□□□□ -0.18
CLN3-246ENST00000636228 CHN2P52757 468 aa13.93□□□□□ -0.18
CLN3-246ENST00000636228 CDK6Q00534 326 aa13.93□□□□□ -0.18
CLN3-246ENST00000636228 POU3F1Q03052 451 aaPredicted RBP13.93□□□□□ -0.18
CLN3-246ENST00000636228 CAMK2DQ13557 499 aa13.93□□□□□ -0.18
CLN3-246ENST00000636228 OR1Q1Q15612 314 aa13.93□□□□□ -0.18
CLN3-246ENST00000636228 REEP3Q6NUK4 255 aa13.93□□□□□ -0.18
CLN3-246ENST00000636228 ULK3Q6PHR2 472 aa13.93□□□□□ -0.18
CLN3-246ENST00000636228 DHRS4L2Q6PKH6 230 aa13.93□□□□□ -0.18
CLN3-246ENST00000636228 ZNF813Q6ZN06 617 aa13.93□□□□□ -0.18
CLN3-246ENST00000636228 NET1Q7Z628 596 aaPredicted RBP13.93□□□□□ -0.18
CLN3-246ENST00000636228 LRP11Q86VZ4 500 aa13.93□□□□□ -0.18
CLN3-246ENST00000636228 C10orf53Q8N6V4 93 aa13.93□□□□□ -0.18
CLN3-246ENST00000636228 DNAJA4Q8WW22 397 aaPredicted RBP13.93□□□□□ -0.18
CLN3-246ENST00000636228 MOGAT1Q96PD6 335 aa13.93□□□□□ -0.18
CLN3-246ENST00000636228 IKZF5Q9H5V7 419 aa13.93□□□□□ -0.18
CLN3-246ENST00000636228 VAPAQ9P0L0 249 aa13.93□□□□□ -0.18
CLN3-246ENST00000636228 FZR1Q9UM11 496 aa13.93□□□□□ -0.18
CLN3-246ENST00000636228 USP22Q9UPT9 525 aa13.93□□□□□ -0.18
CLN3-246ENST00000636228 POFUT2Q9Y2G5 429 aa13.93□□□□□ -0.18
CLN3-246ENST00000636228 CMAHPQ9Y471 501 aa13.93□□□□□ -0.18
CLN3-246ENST00000636228 LOC102725191A0A1B0GVB3 256 aa13.92□□□□□ -0.18
CLN3-246ENST00000636228 HAX1O00165 279 aa13.92□□□□□ -0.18
CLN3-246ENST00000636228 AKAP8O43823 692 aaKnown RBP13.92□□□□□ -0.18
CLN3-246ENST00000636228 PATE4P0C8F1 98 aa13.92□□□□□ -0.18
CLN3-246ENST00000636228 B4GALT1P15291 398 aa13.92□□□□□ -0.18
CLN3-246ENST00000636228 NR4A1P22736 598 aa13.92□□□□□ -0.18
CLN3-246ENST00000636228 SEC24CP53992 1094 aa13.92□□□□□ -0.18
CLN3-246ENST00000636228 CDH12P55289 794 aa13.92□□□□□ -0.18
CLN3-246ENST00000636228 PMS2P3Q13401 168 aa13.92□□□□□ -0.18
CLN3-246ENST00000636228 RIN1Q13671 783 aa13.92□□□□□ -0.18
CLN3-246ENST00000636228 SQLEQ14534 574 aa13.92□□□□□ -0.18
CLN3-246ENST00000636228 GSG1Q2KHT4 349 aa13.92□□□□□ -0.18
CLN3-246ENST00000636228 LRIF1Q5T3J3 769 aa13.92□□□□□ -0.18
CLN3-246ENST00000636228 NHLRC1Q6VVB1 395 aa13.92□□□□□ -0.18
CLN3-246ENST00000636228 CARM1Q86X55 608 aa13.92□□□□□ -0.18
CLN3-246ENST00000636228 LINC01356Q8N9X3 169 aa13.92□□□□□ -0.18
CLN3-246ENST00000636228 OR6N1Q8NGY5 312 aa13.92□□□□□ -0.18
CLN3-246ENST00000636228 SLC47A1Q96FL8 570 aa13.92□□□□□ -0.18
CLN3-246ENST00000636228 SLC41A3Q96GZ6 507 aa13.92□□□□□ -0.18
CLN3-246ENST00000636228 ZNF75AQ96N20 296 aa13.92□□□□□ -0.18
CLN3-246ENST00000636228 SYT3Q9BQG1 590 aa13.92□□□□□ -0.18
CLN3-246ENST00000636228 EBF4Q9BQW3 602 aa13.92□□□□□ -0.18
CLN3-246ENST00000636228 ASPNQ9BXN1 380 aa13.92□□□□□ -0.18
CLN3-246ENST00000636228 TMEM27Q9HBJ8 222 aa13.92□□□□□ -0.18
CLN3-246ENST00000636228 CCDC167Q9P0B6 97 aa13.92□□□□□ -0.18
CLN3-246ENST00000636228 TMEFF2Q9UIK5 374 aaPredicted RBP13.92□□□□□ -0.18
CLN3-246ENST00000636228 ANK2Q01484 3957 aa13.92□□□□□ -0.18
CLN3-246ENST00000636228 MALRD1Q5VYJ5 2156 aa13.92□□□□□ -0.18
CLN3-246ENST00000636228 ZNF14P17017 642 aaPredicted RBP13.91□□□□□ -0.18
CLN3-246ENST00000636228 AHCYP23526 432 aa13.91□□□□□ -0.18
CLN3-246ENST00000636228 COL8A2P25067 703 aa13.91□□□□□ -0.18
CLN3-246ENST00000636228 SRP14P37108 136 aaKnown RBP13.91□□□□□ -0.18
CLN3-246ENST00000636228 ALDH3B1P43353 468 aa13.91□□□□□ -0.18
CLN3-246ENST00000636228 PTDSS1P48651 473 aaKnown RBP13.91□□□□□ -0.18
CLN3-246ENST00000636228 SLC18A1P54219 525 aa13.91□□□□□ -0.18
CLN3-246ENST00000636228 RGS8P57771 180 aaPredicted RBP13.91□□□□□ -0.18
CLN3-246ENST00000636228 STX1BP61266 288 aa13.91□□□□□ -0.18
CLN3-246ENST00000636228 SCARB2Q14108 478 aa13.91□□□□□ -0.18
CLN3-246ENST00000636228 MFSD13AQ14CX5 517 aa13.91□□□□□ -0.18
CLN3-246ENST00000636228 MAD2L1BPQ15013 274 aaPredicted RBP13.91□□□□□ -0.18
CLN3-246ENST00000636228 FAM91A1Q658Y4 838 aa13.91□□□□□ -0.18
CLN3-246ENST00000636228 BLOC1S3Q6QNY0 202 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms