RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 KLF4O43474 513 aa18.21■□□□□ 0.51
CLN3-240ENST00000631023 UPK3AO75631 287 aa18.21■□□□□ 0.51
CLN3-240ENST00000631023 STAMBPO95630 424 aa18.21■□□□□ 0.51
CLN3-240ENST00000631023 IFI30P13284 250 aa18.21■□□□□ 0.51
CLN3-240ENST00000631023 HOXC12P31275 282 aa18.21■□□□□ 0.51
CLN3-240ENST00000631023 FOXG1P55316 489 aaPredicted RBP18.21■□□□□ 0.51
CLN3-240ENST00000631023 VLDLRP98155 873 aa18.21■□□□□ 0.51
CLN3-240ENST00000631023 DNAL1Q4LDG9 190 aa18.21■□□□□ 0.51
CLN3-240ENST00000631023 C1QTNF12Q5T7M4 302 aa18.21■□□□□ 0.51
CLN3-240ENST00000631023 NHLRC1Q6VVB1 395 aa18.21■□□□□ 0.51
CLN3-240ENST00000631023 TSEN54Q7Z6J9 526 aaKnown RBP18.21■□□□□ 0.51
CLN3-240ENST00000631023 NRMQ8IXM6 262 aa18.21■□□□□ 0.51
CLN3-240ENST00000631023 C17orf78Q8N4C9 275 aa18.21■□□□□ 0.51
CLN3-240ENST00000631023 POP5Q969H6 163 aaKnown RBP18.21■□□□□ 0.51
CLN3-240ENST00000631023 ALKBH3Q96Q83 286 aaPredicted RBP18.21■□□□□ 0.51
CLN3-240ENST00000631023 PIP5K1AQ99755 562 aa18.21■□□□□ 0.51
CLN3-240ENST00000631023 THTPAQ9BU02 230 aa18.21■□□□□ 0.51
CLN3-240ENST00000631023 MED29Q9NX70 200 aa18.21■□□□□ 0.51
CLN3-240ENST00000631023 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP18.21■□□□□ 0.51
CLN3-240ENST00000631023 A0A1W2PRQ8 180 aa18.21■□□□□ 0.51
CLN3-240ENST00000631023 SIAH2O43255 324 aa18.21■□□□□ 0.51
CLN3-240ENST00000631023 SMIM11AP58511 58 aa18.21■□□□□ 0.51
CLN3-240ENST00000631023 PRKCDQ05655 676 aa18.21■□□□□ 0.51
CLN3-240ENST00000631023 DGCR6Q14129 220 aa18.21■□□□□ 0.51
CLN3-240ENST00000631023 CYP2R1Q6VVX0 501 aa18.21■□□□□ 0.51
CLN3-240ENST00000631023 MBOAT2Q6ZWT7 520 aa18.21■□□□□ 0.51
CLN3-240ENST00000631023 CDH24Q86UP0 819 aa18.21■□□□□ 0.51
CLN3-240ENST00000631023 DHFR2Q86XF0 187 aa18.21■□□□□ 0.51
CLN3-240ENST00000631023 TMEM123Q8N131 208 aa18.21■□□□□ 0.51
CLN3-240ENST00000631023 PLPPR2Q96GM1 343 aa18.21■□□□□ 0.51
CLN3-240ENST00000631023 TXNDC15Q96J42 360 aa18.21■□□□□ 0.51
CLN3-240ENST00000631023 LRR1Q96L50 414 aa18.21■□□□□ 0.51
CLN3-240ENST00000631023 ADAD1Q96M93 576 aaKnown RBP18.21■□□□□ 0.51
CLN3-240ENST00000631023 EMC6Q9BV81 110 aa18.21■□□□□ 0.51
CLN3-240ENST00000631023 ESRP2Q9H6T0 727 aaKnown RBP18.21■□□□□ 0.51
CLN3-240ENST00000631023 B3GAT2Q9NPZ5 323 aa18.21■□□□□ 0.51
CLN3-240ENST00000631023 MYO9AB2RTY4 2548 aa18.2■□□□□ 0.5
CLN3-240ENST00000631023 A0A087WUU8 490 aa18.2■□□□□ 0.5
CLN3-240ENST00000631023 PIP5K1CO60331 668 aa18.2■□□□□ 0.5
CLN3-240ENST00000631023 PDE5AO76074 875 aa18.2■□□□□ 0.5
CLN3-240ENST00000631023 SAGP10523 405 aaPredicted RBP18.2■□□□□ 0.5
CLN3-240ENST00000631023 IFNGR1P15260 489 aa18.2■□□□□ 0.5
CLN3-240ENST00000631023 CDH2P19022 906 aaPredicted RBP18.2■□□□□ 0.5
CLN3-240ENST00000631023 SH3BGRP55822 239 aaPredicted RBP18.2■□□□□ 0.5
CLN3-240ENST00000631023 ROR2Q01974 943 aaKnown RBP18.2■□□□□ 0.5
CLN3-240ENST00000631023 LGALS3BPQ08380 585 aa18.2■□□□□ 0.5
CLN3-240ENST00000631023 SLC35D2Q76EJ3 337 aa18.2■□□□□ 0.5
CLN3-240ENST00000631023 IL1RAPQ9NPH3 570 aa18.2■□□□□ 0.5
CLN3-240ENST00000631023 A0A1W2PRG6 482 aa18.19■□□□□ 0.5
CLN3-240ENST00000631023 RPL36A-HNRNPH2H7BZ11 118 aa18.19■□□□□ 0.5
CLN3-240ENST00000631023 SEMG1P04279 462 aa18.19■□□□□ 0.5
CLN3-240ENST00000631023 FABP3P05413 133 aa18.19■□□□□ 0.5
CLN3-240ENST00000631023 FUT4P22083 530 aa18.19■□□□□ 0.5
CLN3-240ENST00000631023 BIDP55957 195 aa18.19■□□□□ 0.5
CLN3-240ENST00000631023 RPL18Q07020 188 aaKnown RBP18.19■□□□□ 0.5
CLN3-240ENST00000631023 FGD3Q5JSP0 725 aa18.19■□□□□ 0.5
CLN3-240ENST00000631023 CARD17Q5XLA6 110 aa18.19■□□□□ 0.5
CLN3-240ENST00000631023 KLHL24Q6TFL4 600 aa18.19■□□□□ 0.5
CLN3-240ENST00000631023 C20orf196Q8IYI0 205 aa18.19■□□□□ 0.5
CLN3-240ENST00000631023 OR52N5Q8NH56 324 aa18.19■□□□□ 0.5
CLN3-240ENST00000631023 OR6X1Q8NH79 312 aa18.19■□□□□ 0.5
CLN3-240ENST00000631023 SLC7A13Q8TCU3 470 aa18.19■□□□□ 0.5
CLN3-240ENST00000631023 ASB9Q96DX5 294 aa18.19■□□□□ 0.5
CLN3-240ENST00000631023 ZNF347Q96SE7 839 aa18.19■□□□□ 0.5
CLN3-240ENST00000631023 PLEKHF2Q9H8W4 249 aa18.19■□□□□ 0.5
CLN3-240ENST00000631023 DIRAS1O95057 198 aa18.18■□□□□ 0.5
CLN3-240ENST00000631023 BCL10O95999 233 aa18.18■□□□□ 0.5
CLN3-240ENST00000631023 CAMK2DQ13557 499 aa18.18■□□□□ 0.5
CLN3-240ENST00000631023 ANKDD1AQ495B1 522 aa18.18■□□□□ 0.5
CLN3-240ENST00000631023 LCN8Q6JVE9 175 aa18.18■□□□□ 0.5
CLN3-240ENST00000631023 PODNL1Q6PEZ8 512 aa18.18■□□□□ 0.5
CLN3-240ENST00000631023 HDDC2Q7Z4H3 204 aa18.18■□□□□ 0.5
CLN3-240ENST00000631023 OR6N1Q8NGY5 312 aa18.18■□□□□ 0.5
CLN3-240ENST00000631023 BOD1Q96IK1 185 aa18.18■□□□□ 0.5
CLN3-240ENST00000631023 LRGUKQ96M69 825 aa18.18■□□□□ 0.5
CLN3-240ENST00000631023 BTBD10Q9BSF8 475 aa18.18■□□□□ 0.5
CLN3-240ENST00000631023 CRLF2Q9HC73 371 aa18.18■□□□□ 0.5
CLN3-240ENST00000631023 GPR35Q9HC97 309 aa18.18■□□□□ 0.5
CLN3-240ENST00000631023 KRCC1Q9NPI7 259 aaPredicted RBP18.18■□□□□ 0.5
CLN3-240ENST00000631023 SLC17A5Q9NRA2 495 aa18.18■□□□□ 0.5
CLN3-240ENST00000631023 INIPQ9NRY2 104 aa18.18■□□□□ 0.5
CLN3-240ENST00000631023 TMEM5Q9Y2B1 443 aa18.18■□□□□ 0.5
CLN3-240ENST00000631023 AMDHD2Q9Y303 409 aa18.18■□□□□ 0.5
CLN3-240ENST00000631023 PLCE1Q9P212 2302 aa18.18■□□□□ 0.5
CLN3-240ENST00000631023 CSMD2Q7Z408 3487 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 EFCAB9A8MZ26 197 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 M0R3G1 203 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 TSPAN19P0C672 248 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 ATP6V1B2P21281 511 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 AQP2P41181 271 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 SLC9A3P48764 834 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 RASSF2P50749 326 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 PRPS1P60891 318 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 LSM11P83369 360 aaKnown RBP eCLIP18.17■□□□□ 0.5
CLN3-240ENST00000631023 IQCCQ4KMZ1 466 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 TBPL2Q6SJ96 375 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 KLHL17Q6TDP4 642 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 ZDHHC21Q8IVQ6 265 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 OR1K1Q8NGR3 316 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 NRGNQ92686 78 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms