RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-223ENST00000629179 TMEM171Q8WVE6 324 aa12.43□□□□□ -0.42
PNKP-223ENST00000629179 LZICQ8WZA0 190 aa12.43□□□□□ -0.42
PNKP-223ENST00000629179 PERPQ96FX8 193 aa12.43□□□□□ -0.42
PNKP-223ENST00000629179 BOD1Q96IK1 185 aa12.43□□□□□ -0.42
PNKP-223ENST00000629179 KCTD14Q9BQ13 255 aaPredicted RBP12.43□□□□□ -0.42
PNKP-223ENST00000629179 SLC19A3Q9BZV2 496 aa12.43□□□□□ -0.42
PNKP-223ENST00000629179 POLR2J2Q9GZM3 115 aaKnown RBP12.43□□□□□ -0.42
PNKP-223ENST00000629179 POLR2J3Q9H1A7 115 aaKnown RBP12.43□□□□□ -0.42
PNKP-223ENST00000629179 FKRPQ9H9S5 495 aa12.43□□□□□ -0.42
PNKP-223ENST00000629179 TAS2R5Q9NYW4 299 aa12.43□□□□□ -0.42
PNKP-223ENST00000629179 CISD1Q9NZ45 108 aaKnown RBP12.43□□□□□ -0.42
PNKP-223ENST00000629179 ARL2BPQ9Y2Y0 163 aa12.43□□□□□ -0.42
PNKP-223ENST00000629179 SNX13Q9Y5W8 968 aa12.43□□□□□ -0.42
PNKP-223ENST00000629179 C2CD3Q4AC94 2353 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 RPL36A-HNRNPH2H7BZ11 118 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 M0R3G1 203 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 OR6A2O95222 327 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 WNT11O96014 354 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 MT-ND1P03886 318 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 HIST1H2ABP04908 130 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 SOD3P08294 240 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 DANCRP0C864 163 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 UMPSP11172 480 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 FUT4P22083 530 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 CDH11P55287 796 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 TUBA1BP68363 451 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 TUBA4AP68366 448 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 ZP4Q12836 540 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 CAMK2DQ13557 499 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 CEACAM16Q2WEN9 425 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 PGGHGQ32M88 737 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 SHEQ5VZ18 495 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 SLC22A25Q6T423 547 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 TUBA1AQ71U36 451 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 CBLL1Q75N03 491 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 HIST3H2AQ7L7L0 130 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 SLC46A3Q7Z3Q1 461 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 C20orf196Q8IYI0 205 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 LRRC75A-AS1Q8N1F1 130 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 PIK3C3Q8NEB9 887 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 SMAP2Q8WU79 429 aaPredicted RBP12.42□□□□□ -0.42
PNKP-223ENST00000629179 HIST1H2ACQ93077 130 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 NELFAQ9H3P2 528 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 CRLF2Q9HC73 371 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 C20orf141Q9NUB4 165 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 ARL8BQ9NVJ2 186 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 ABCD2Q9UBJ2 740 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 ZNF229Q9UJW7 825 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 A4GNTQ9UNA3 340 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 MGAT4BQ9UQ53 548 aa12.42□□□□□ -0.42
PNKP-223ENST00000629179 TLN2Q9Y4G6 2542 aa12.41□□□□□ -0.42
PNKP-223ENST00000629179 ZNF726A6NNF4 738 aa12.41□□□□□ -0.42
PNKP-223ENST00000629179 J3KTA2 159 aa12.41□□□□□ -0.42
PNKP-223ENST00000629179 NDUFAB1O14561 156 aa12.41□□□□□ -0.42
PNKP-223ENST00000629179 ARHGEF9O43307 516 aa12.41□□□□□ -0.42
PNKP-223ENST00000629179 RNF13O43567 381 aa12.41□□□□□ -0.42
PNKP-223ENST00000629179 SERPINA1P01009 418 aa12.41□□□□□ -0.42
PNKP-223ENST00000629179 ASAH2BP0C7U1 165 aa12.41□□□□□ -0.42
PNKP-223ENST00000629179 IFNGR1P15260 489 aa12.41□□□□□ -0.42
PNKP-223ENST00000629179 FUT1P19526 365 aa12.41□□□□□ -0.42
PNKP-223ENST00000629179 RBM34P42696 430 aaKnown RBP12.41□□□□□ -0.42
PNKP-223ENST00000629179 PTH2RP49190 550 aa12.41□□□□□ -0.42
PNKP-223ENST00000629179 BIDP55957 195 aa12.41□□□□□ -0.42
PNKP-223ENST00000629179 UBE2NP61088 152 aaKnown RBP12.41□□□□□ -0.42
PNKP-223ENST00000629179 Q5PR19 223 aa12.41□□□□□ -0.42
PNKP-223ENST00000629179 ANKRD16Q6P6B7 361 aa12.41□□□□□ -0.42
PNKP-223ENST00000629179 CSPG4Q6UVK1 2322 aa12.41□□□□□ -0.42
PNKP-223ENST00000629179 FKBP9P1Q75LS8 142 aa12.41□□□□□ -0.42
PNKP-223ENST00000629179 SLC35D2Q76EJ3 337 aa12.41□□□□□ -0.42
PNKP-223ENST00000629179 RNF148Q8N7C7 305 aa12.41□□□□□ -0.42
PNKP-223ENST00000629179 TMEM239Q8WW34 195 aa12.41□□□□□ -0.42
PNKP-223ENST00000629179 FAM162AQ96A26 154 aa12.41□□□□□ -0.42
PNKP-223ENST00000629179 PRRC1Q96M27 445 aa12.41□□□□□ -0.42
PNKP-223ENST00000629179 HS6ST2Q96MM7 605 aa12.41□□□□□ -0.42
PNKP-223ENST00000629179 GSX2Q9BZM3 304 aa12.41□□□□□ -0.42
PNKP-223ENST00000629179 CXorf56Q9H5V9 222 aa12.41□□□□□ -0.42
PNKP-223ENST00000629179 ADA2Q9NZK5 511 aa12.41□□□□□ -0.42
PNKP-223ENST00000629179 RHCGQ9UBD6 479 aa12.41□□□□□ -0.42
PNKP-223ENST00000629179 EGFL7Q9UHF1 273 aa12.41□□□□□ -0.42
PNKP-223ENST00000629179 MAGED1Q9Y5V3 778 aaPredicted RBP12.41□□□□□ -0.42
PNKP-223ENST00000629179 E7EQL1 145 aa12.4□□□□□ -0.42
PNKP-223ENST00000629179 BLOC1S5-TXNDC5H3BN57 136 aa12.4□□□□□ -0.42
PNKP-223ENST00000629179 PIP5K1CO60331 668 aa12.4□□□□□ -0.42
PNKP-223ENST00000629179 SEC14L2O76054 403 aa12.4□□□□□ -0.42
PNKP-223ENST00000629179 OR7A10O76100 309 aa12.4□□□□□ -0.42
PNKP-223ENST00000629179 CD8AP01732 235 aa12.4□□□□□ -0.42
PNKP-223ENST00000629179 IFNW1P05000 195 aa12.4□□□□□ -0.42
PNKP-223ENST00000629179 THRBP10828 461 aa12.4□□□□□ -0.42
PNKP-223ENST00000629179 SH3BGRP55822 239 aaPredicted RBP12.4□□□□□ -0.42
PNKP-223ENST00000629179 RPS4XP62701 263 aaKnown RBP12.4□□□□□ -0.42
PNKP-223ENST00000629179 LSM11P83369 360 aaKnown RBP eCLIP12.4□□□□□ -0.421e-11■■■■■ 50.1
PNKP-223ENST00000629179 ST3GAL3Q11203 375 aa12.4□□□□□ -0.42
PNKP-223ENST00000629179 IFI44LQ53G44 452 aa12.4□□□□□ -0.42
PNKP-223ENST00000629179 C1QTNF12Q5T7M4 302 aa12.4□□□□□ -0.42
PNKP-223ENST00000629179 B3GLCTQ6Y288 498 aa12.4□□□□□ -0.42
PNKP-223ENST00000629179 NANOGNBQ7Z5D8 188 aa12.4□□□□□ -0.42
PNKP-223ENST00000629179 RBM15BQ8NDT2 890 aaKnown RBP12.4□□□□□ -0.42
PNKP-223ENST00000629179 ANKK1Q8NFD2 765 aa12.4□□□□□ -0.42
PNKP-223ENST00000629179 OR6N1Q8NGY5 312 aa12.4□□□□□ -0.42
PNKP-223ENST00000629179 MAGEE2Q8TD90 523 aaPredicted RBP12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms