RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 IGHV3-43DP0DP04 118 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 CCDC130P13994 396 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 IL12AP29459 219 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 DDOSTP39656 456 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 MAP3K8P41279 467 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 P2RY1P47900 373 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 CAMLGP49069 296 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 CYB561P49447 251 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 RAP1AP62834 184 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 ACVR1Q04771 509 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 KLRC3Q07444 240 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 MN1Q10571 1320 aaPredicted RBP1.02□□□□□ -2.25
SCN1A-208ENST00000625916 MESDQ14696 234 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 OXA1LQ15070 435 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 TATDN3Q17R31 274 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 TTLL9Q3SXZ7 439 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 PLA2G4DQ86XP0 818 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 SLC38A6Q8IZM9 456 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 GEMIN6Q8WXD5 167 aaKnown RBP1.02□□□□□ -2.25
SCN1A-208ENST00000625916 RGP1Q92546 391 aaPredicted RBP1.02□□□□□ -2.25
SCN1A-208ENST00000625916 C4orf36Q96KX1 117 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 AMDHD1Q96NU7 426 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 TSSK3Q96PN8 268 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 RNF157Q96PX1 679 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 RNF2Q99496 336 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 GPA33Q99795 319 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 FOXC2Q99958 501 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 CAPS2Q9BXY5 557 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 C1orf21Q9H246 121 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 RWDD1Q9H446 243 aaPredicted RBP1.02□□□□□ -2.25
SCN1A-208ENST00000625916 DBNDD1Q9H9R9 158 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 CALYQ9NYX4 217 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 XCL2Q9UBD3 114 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 PIKFYVEQ9Y2I7 2098 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 OR10H1Q9Y4A9 318 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 MFHAS1Q9Y4C4 1052 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 TMEM14AQ9Y6G1 99 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 SDK2Q58EX2 2172 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 IGLV1-50A0A075B6I6 118 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 TCRBV9S1A1TA0A576 114 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 CIB4A0PJX0 185 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 A8MUI8 341 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 A8MXQ7 604 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 POLR2DO15514 142 aaKnown RBP1.01□□□□□ -2.25
SCN1A-208ENST00000625916 RBFOX2O43251 390 aaKnown RBP eCLIP1.01□□□□□ -2.25
SCN1A-208ENST00000625916 PRPSAP2O60256 369 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 SMIM10L1P0DMW3 83 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 PRPS2P11908 318 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 MMP11P24347 488 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 HMGB2P26583 209 aaKnown RBP1.01□□□□□ -2.25
SCN1A-208ENST00000625916 MAPK3P27361 379 aaPredicted RBP1.01□□□□□ -2.25
SCN1A-208ENST00000625916 RDXP35241 583 aaKnown RBP1.01□□□□□ -2.25
SCN1A-208ENST00000625916 KIR3DL2P43630 455 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 FGF8P55075 233 aaPredicted RBP1.01□□□□□ -2.25
SCN1A-208ENST00000625916 ERVK-25P63136 954 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 VGLL4Q14135 290 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 INAQ16352 499 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 TPD52L1Q16890 204 aaPredicted RBP1.01□□□□□ -2.25
SCN1A-208ENST00000625916 CARD16Q5EG05 197 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 ZNF684Q5T5D7 378 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 GALNT17Q6IS24 598 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 C1orf94Q6P1W5 598 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 CNIH2Q6PI25 160 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 TRIM69Q86WT6 500 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 GRAMD2AQ8IUY3 354 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 ZDHHC21Q8IVQ6 265 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 ZNF679Q8IYX0 411 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 C15orf56Q8N910 161 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 IPMKQ8NFU5 416 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 VN1R2Q8NFZ6 395 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 OR10G4Q8NGN3 311 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 OR1F12Q8NHA8 337 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 UFD1Q92890 307 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 FGF14Q92915 247 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 PELI1Q96FA3 418 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 SMIM10Q96HG1 83 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 CCT7Q99832 543 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 OMDQ99983 421 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 ZNF416Q9BWM5 594 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 LINC00597Q9H2U6 94 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 RPP21Q9H633 154 aaKnown RBP1.01□□□□□ -2.25
SCN1A-208ENST00000625916 NHEJ1Q9H9Q4 299 aaPredicted RBP1.01□□□□□ -2.25
SCN1A-208ENST00000625916 ELOVL3Q9HB03 270 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 MCCC2Q9HCC0 563 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 GIN1Q9NXP7 522 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 SPATA7Q9P0W8 599 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 ZNRD1Q9P1U0 126 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 PCSK1NQ9UHG2 260 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 ZNF230Q9UIE0 474 aaPredicted RBP1.01□□□□□ -2.25
SCN1A-208ENST00000625916 MMP17Q9ULZ9 603 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 RPH3ALQ9UNE2 315 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 F11RQ9Y624 299 aaKnown RBP1.01□□□□□ -2.25
SCN1A-208ENST00000625916 U3KQV3 271 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 SHROOM3Q8TF72 1996 aa1.01□□□□□ -2.25
SCN1A-208ENST00000625916 A0A1B0GVX0 72 aa1□□□□□ -2.25
SCN1A-208ENST00000625916 BTN3A3O00478 584 aa1□□□□□ -2.25
SCN1A-208ENST00000625916 BCAS1O75363 584 aaPredicted RBP1□□□□□ -2.25
SCN1A-208ENST00000625916 ATP5LO75964 103 aa1□□□□□ -2.25
SCN1A-208ENST00000625916 SLC25A14O95258 325 aaPredicted RBP1□□□□□ -2.25
SCN1A-208ENST00000625916 AK1P00568 194 aa1□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms