RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 CRMP1Q14194 572 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 HABP2Q14520 560 aaPredicted RBP9.91□□□□□ -0.82
UPF3A-212ENST00000619079 RPE65Q16518 533 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 ARHGAP11AQ6P4F7 1023 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 TMEM71Q6P5X7 295 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 PARM1Q6UWI2 310 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 GDPD4Q6W3E5 623 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 TMPRSS11FQ6ZWK6 438 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 ABHD13Q7L211 337 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 ZSCAN1Q8NBB4 408 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 INO80EQ8NBZ0 244 aaPredicted RBP9.91□□□□□ -0.82
UPF3A-212ENST00000619079 STEAP2Q8NFT2 490 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 OR51S1Q8NGJ8 323 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 STOML3Q8TAV4 291 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 RNF141Q8WVD5 230 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 FGF14Q92915 247 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 SLC25A21Q9BQT8 299 aaPredicted RBP9.91□□□□□ -0.82
UPF3A-212ENST00000619079 POTEKPQ9BYX7 375 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 EGLN1Q9GZT9 426 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 SLC25A18Q9H1K4 315 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 LHX9Q9NQ69 397 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 METTL1Q9UBP6 276 aaKnown RBP9.91□□□□□ -0.82
UPF3A-212ENST00000619079 GNG8Q9UK08 70 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 ZNF443Q9Y2A4 671 aaPredicted RBP9.91□□□□□ -0.82
UPF3A-212ENST00000619079 ZNF281Q9Y2X9 895 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 MUC3AQ02505 3323 aa9.9□□□□□ -0.82
UPF3A-212ENST00000619079 TBC1D3EA0A087X179 549 aa9.9□□□□□ -0.82
UPF3A-212ENST00000619079 DUXAA6NLW8 204 aa9.9□□□□□ -0.82
UPF3A-212ENST00000619079 PIN1P1O15428 100 aa9.9□□□□□ -0.82
UPF3A-212ENST00000619079 AGR2O95994 175 aa9.9□□□□□ -0.82
UPF3A-212ENST00000619079 ITGB2P05107 769 aa9.9□□□□□ -0.82
UPF3A-212ENST00000619079 OR4E1P0C645 316 aa9.9□□□□□ -0.82
UPF3A-212ENST00000619079 GTF2F2P13984 249 aa9.9□□□□□ -0.82
UPF3A-212ENST00000619079 ITPKBP27987 946 aa9.9□□□□□ -0.82
UPF3A-212ENST00000619079 RBM34P42696 430 aaKnown RBP9.9□□□□□ -0.82
UPF3A-212ENST00000619079 AKR1C2P52895 323 aa9.9□□□□□ -0.82
UPF3A-212ENST00000619079 CLDN12P56749 244 aa9.9□□□□□ -0.82
UPF3A-212ENST00000619079 AKR1C1Q04828 323 aa9.9□□□□□ -0.82
UPF3A-212ENST00000619079 ZNF658BQ4V348 819 aaPredicted RBP9.9□□□□□ -0.82
UPF3A-212ENST00000619079 FAM46CQ5VWP2 391 aa9.9□□□□□ -0.82
UPF3A-212ENST00000619079 FCRLBQ6BAA4 426 aa9.9□□□□□ -0.82
UPF3A-212ENST00000619079 TANGO2Q6ICL3 276 aa9.9□□□□□ -0.82
UPF3A-212ENST00000619079 YAF2Q8IY57 180 aa9.9□□□□□ -0.82
UPF3A-212ENST00000619079 DND1Q8IYX4 353 aaKnown RBP9.9□□□□□ -0.82
UPF3A-212ENST00000619079 LILRB2Q8N423 598 aa9.9□□□□□ -0.82
UPF3A-212ENST00000619079 BOLLQ8N9W6 283 aaKnown RBP9.9□□□□□ -0.82
UPF3A-212ENST00000619079 TMEM239Q8WW34 195 aa9.9□□□□□ -0.82
UPF3A-212ENST00000619079 RAD51AP1Q96B01 352 aa9.9□□□□□ -0.82
UPF3A-212ENST00000619079 PDCD1LG2Q9BQ51 273 aa9.9□□□□□ -0.82
UPF3A-212ENST00000619079 TREM1Q9NP99 234 aa9.9□□□□□ -0.82
UPF3A-212ENST00000619079 TMEM100Q9NV29 134 aa9.9□□□□□ -0.82
UPF3A-212ENST00000619079 UQCC1Q9NVA1 299 aa9.9□□□□□ -0.82
UPF3A-212ENST00000619079 LSM7Q9UK45 103 aaKnown RBP9.9□□□□□ -0.82
UPF3A-212ENST00000619079 NTNG1Q9Y2I2 539 aa9.9□□□□□ -0.82
UPF3A-212ENST00000619079 TP53BP1Q12888 1972 aaPredicted RBP9.9□□□□□ -0.82
UPF3A-212ENST00000619079 PLXNA2O75051 1894 aa9.9□□□□□ -0.83
UPF3A-212ENST00000619079 A0A0A6YYD5 115 aa9.9□□□□□ -0.83
UPF3A-212ENST00000619079 PMS2P1A4D2B8 440 aa9.9□□□□□ -0.83
UPF3A-212ENST00000619079 TMEM200CA6NKL6 621 aa9.9□□□□□ -0.83
UPF3A-212ENST00000619079 LEFTY2O00292 366 aa9.9□□□□□ -0.83
UPF3A-212ENST00000619079 ACTL6AO96019 429 aa9.9□□□□□ -0.83
UPF3A-212ENST00000619079 PTHLHP12272 177 aa9.9□□□□□ -0.83
UPF3A-212ENST00000619079 TPT1P13693 172 aaKnown RBP9.9□□□□□ -0.83
UPF3A-212ENST00000619079 MAKP20794 623 aa9.9□□□□□ -0.83
UPF3A-212ENST00000619079 CD70P32970 193 aa9.9□□□□□ -0.83
UPF3A-212ENST00000619079 CASRP41180 1078 aa9.9□□□□□ -0.83
UPF3A-212ENST00000619079 SSR2P43308 183 aa9.9□□□□□ -0.83
UPF3A-212ENST00000619079 ACTBP60709 375 aa9.9□□□□□ -0.83
UPF3A-212ENST00000619079 ACTG1P63261 375 aa9.9□□□□□ -0.83
UPF3A-212ENST00000619079 SLC7A9P82251 487 aa9.9□□□□□ -0.83
UPF3A-212ENST00000619079 GGTLC2Q14390 218 aa9.9□□□□□ -0.83
UPF3A-212ENST00000619079 Q3ZCU0 254 aa9.9□□□□□ -0.83
UPF3A-212ENST00000619079 OR4C11Q6IEV9 310 aa9.9□□□□□ -0.83
UPF3A-212ENST00000619079 LRRTM4Q86VH4 590 aa9.9□□□□□ -0.83
UPF3A-212ENST00000619079 TMEM200AQ86VY9 491 aa9.9□□□□□ -0.83
UPF3A-212ENST00000619079 PARGQ86W56 976 aa9.9□□□□□ -0.83
UPF3A-212ENST00000619079 ZG16BQ96DA0 208 aa9.9□□□□□ -0.83
UPF3A-212ENST00000619079 C16orf58Q96GQ5 468 aa9.9□□□□□ -0.83
UPF3A-212ENST00000619079 POFUT1Q9H488 388 aa9.9□□□□□ -0.83
UPF3A-212ENST00000619079 KLHL31Q9H511 634 aa9.9□□□□□ -0.83
UPF3A-212ENST00000619079 CCDC86Q9H6F5 360 aaKnown RBP9.9□□□□□ -0.83
UPF3A-212ENST00000619079 MOKQ9UQ07 419 aa9.9□□□□□ -0.83
UPF3A-212ENST00000619079 SIGLEC7Q9Y286 467 aa9.9□□□□□ -0.83
UPF3A-212ENST00000619079 KCNE3Q9Y6H6 103 aa9.9□□□□□ -0.83
UPF3A-212ENST00000619079 PLXND1Q9Y4D7 1925 aa9.89□□□□□ -0.83
UPF3A-212ENST00000619079 RNF222A6NCQ9 220 aa9.89□□□□□ -0.83
UPF3A-212ENST00000619079 COLCA2A8K830 154 aa9.89□□□□□ -0.83
UPF3A-212ENST00000619079 PHYHO14832 338 aa9.89□□□□□ -0.83
UPF3A-212ENST00000619079 FADS1O60427 444 aa9.89□□□□□ -0.83
UPF3A-212ENST00000619079 GREM1O60565 184 aa9.89□□□□□ -0.83
UPF3A-212ENST00000619079 CLUP10909 449 aa9.89□□□□□ -0.83
UPF3A-212ENST00000619079 CD79AP11912 226 aa9.89□□□□□ -0.83
UPF3A-212ENST00000619079 ABCD3P28288 659 aa9.89□□□□□ -0.83
UPF3A-212ENST00000619079 REEP5Q00765 189 aa9.89□□□□□ -0.83
UPF3A-212ENST00000619079 NAAAQ02083 359 aa9.89□□□□□ -0.83
UPF3A-212ENST00000619079 ZP2Q05996 745 aa9.89□□□□□ -0.83
UPF3A-212ENST00000619079 ZNF234Q14588 700 aa9.89□□□□□ -0.83
UPF3A-212ENST00000619079 C9orf64Q5T6V5 341 aa9.89□□□□□ -0.83
UPF3A-212ENST00000619079 RBMS3Q6XE24 437 aaKnown RBP9.89□□□□□ -0.83
UPF3A-212ENST00000619079 SLC35F2Q8IXU6 374 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms