RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 ULBP3Q9BZM4 244 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 TMED7Q9Y3B3 224 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 TRAV36DV7A0A075B6V5 113 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 NSG1A0A0A6YYJ2 146 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 FADS1O60427 444 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 RAB6AP20340 208 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 POLR2HP52434 150 aaKnown RBP12.92□□□□□ -0.34
CPSF1-212ENST00000616140 RBM39Q14498 530 aaKnown RBP12.92□□□□□ -0.34
CPSF1-212ENST00000616140 NKG7Q16617 165 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 GPR155Q7Z3F1 870 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 MKXQ8IYA7 352 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 FRMD1Q8N878 549 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 PLPP7Q8NBV4 271 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 OR4K15Q8NH41 348 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 RHBDD1Q8TEB9 315 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 PIGCQ92535 297 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 NAT6Q93015 286 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 ZNF566Q969W8 418 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 GABARAPL1Q9H0R8 117 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 SEMA6CQ9H3T2 930 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 SLC23A2Q9UGH3 650 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 ZNF225Q9UK10 706 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 CCDC163A0A0D9SF12 145 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 SLC2A10O95528 541 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 MYOGP15173 224 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 SRMP19623 302 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 CCR9P51686 369 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 DPTQ07507 201 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 MPEG1Q2M385 716 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 VASH1Q7L8A9 365 aaPredicted RBP12.92□□□□□ -0.34
CPSF1-212ENST00000616140 TMEM99Q8N816 258 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 VN1R2Q8NFZ6 395 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 STK35Q8TDR2 534 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 PHYHIPQ92561 330 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 DVL3Q92997 716 aaPredicted RBP12.92□□□□□ -0.34
CPSF1-212ENST00000616140 TMEM68Q96MH6 324 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 PPA2Q9H2U2 334 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 NELFAQ9H3P2 528 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 SRP9P49458 86 aaKnown RBP12.92□□□□□ -0.34
CPSF1-212ENST00000616140 DYRK1AQ13627 763 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 YIF1BQ5BJH7 314 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 CLVS2Q5SYC1 327 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 C9orf135Q5VTT2 229 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 LYSMD4Q5XG99 296 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 NANOS1Q8WY41 292 aaKnown RBP12.92□□□□□ -0.34
CPSF1-212ENST00000616140 RAB3CQ96E17 227 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 HHIPL1Q96JK4 782 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 CMSS1Q9BQ75 279 aaKnown RBP12.92□□□□□ -0.34
CPSF1-212ENST00000616140 SEC22CQ9BRL7 303 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 IL21Q9HBE4 155 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 MCTS1Q9ULC4 181 aaKnown RBP12.92□□□□□ -0.34
CPSF1-212ENST00000616140 C19orf53Q9UNZ5 99 aaPredicted RBP12.92□□□□□ -0.34
CPSF1-212ENST00000616140 PCDHGA1Q9Y5H4 931 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 SCRG1O75711 98 aa12.91□□□□□ -0.34
CPSF1-212ENST00000616140 ITGBL1O95965 494 aaPredicted RBP12.91□□□□□ -0.34
CPSF1-212ENST00000616140 IDH3GP51553 393 aaPredicted RBP12.91□□□□□ -0.34
CPSF1-212ENST00000616140 TAS2R20P59543 309 aa12.91□□□□□ -0.34
CPSF1-212ENST00000616140 CNN3Q15417 329 aaKnown RBP12.91□□□□□ -0.34
CPSF1-212ENST00000616140 PYCR3Q53H96 274 aa12.91□□□□□ -0.34
CPSF1-212ENST00000616140 Q6ZTK2 550 aa12.91□□□□□ -0.34
CPSF1-212ENST00000616140 LRRC18Q8N456 261 aa12.91□□□□□ -0.34
CPSF1-212ENST00000616140 FAM3DQ96BQ1 224 aa12.91□□□□□ -0.34
CPSF1-212ENST00000616140 ACAD8Q9UKU7 415 aa12.91□□□□□ -0.34
CPSF1-212ENST00000616140 ANKRD33BA6NCL7 494 aa12.91□□□□□ -0.34
CPSF1-212ENST00000616140 B4DXG7 233 aa12.91□□□□□ -0.34
CPSF1-212ENST00000616140 PAPLNO95428 1278 aa12.91□□□□□ -0.34
CPSF1-212ENST00000616140 GDF1P27539 372 aa12.91□□□□□ -0.34
CPSF1-212ENST00000616140 EFNA3P52797 238 aa12.91□□□□□ -0.34
CPSF1-212ENST00000616140 BIDP55957 195 aa12.91□□□□□ -0.34
CPSF1-212ENST00000616140 COMTD1Q86VU5 262 aa12.91□□□□□ -0.34
CPSF1-212ENST00000616140 DNAAF1Q8NEP3 725 aa12.91□□□□□ -0.34
CPSF1-212ENST00000616140 OR56B2PQ8NGI1 322 aa12.91□□□□□ -0.34
CPSF1-212ENST00000616140 ZNF385DQ9H6B1 395 aa12.91□□□□□ -0.34
CPSF1-212ENST00000616140 ADAM18Q9Y3Q7 739 aa12.91□□□□□ -0.34
CPSF1-212ENST00000616140 B8ZZF3 427 aa12.91□□□□□ -0.34
CPSF1-212ENST00000616140 P2RY10O00398 339 aa12.91□□□□□ -0.34
CPSF1-212ENST00000616140 GLCEO94923 617 aa12.91□□□□□ -0.34
CPSF1-212ENST00000616140 MTCP1P56278 107 aa12.91□□□□□ -0.34
CPSF1-212ENST00000616140 C14orf28Q4W4Y0 310 aa12.91□□□□□ -0.34
CPSF1-212ENST00000616140 FAHD1Q6P587 224 aa12.91□□□□□ -0.34
CPSF1-212ENST00000616140 RSC1A1Q92681 617 aa12.91□□□□□ -0.34
CPSF1-212ENST00000616140 RSPRY1Q96DX4 576 aa12.91□□□□□ -0.34
CPSF1-212ENST00000616140 ENKD1Q9H0I2 346 aa12.91□□□□□ -0.34
CPSF1-212ENST00000616140 SLC6A13Q9NSD5 602 aa12.91□□□□□ -0.34
CPSF1-212ENST00000616140 CHST2Q9Y4C5 530 aa12.91□□□□□ -0.34
CPSF1-212ENST00000616140 PHIPQ8WWQ0 1821 aa12.91□□□□□ -0.34
CPSF1-212ENST00000616140 SVILO95425 2214 aa12.9□□□□□ -0.34
CPSF1-212ENST00000616140 LOC102725191A0A1B0GVB3 256 aa12.9□□□□□ -0.34
CPSF1-212ENST00000616140 SLC22A23A1A5C7 686 aa12.9□□□□□ -0.34
CPSF1-212ENST00000616140 M0QYG6 137 aa12.9□□□□□ -0.34
CPSF1-212ENST00000616140 BCAT2O15382 392 aaPredicted RBP12.9□□□□□ -0.34
CPSF1-212ENST00000616140 FGF17O60258 216 aa12.9□□□□□ -0.34
CPSF1-212ENST00000616140 ATG12O94817 140 aa12.9□□□□□ -0.34
CPSF1-212ENST00000616140 ELK1P19419 428 aa12.9□□□□□ -0.34
CPSF1-212ENST00000616140 POU3F2P20265 443 aaPredicted RBP12.9□□□□□ -0.34
CPSF1-212ENST00000616140 ALDH3B1P43353 468 aa12.9□□□□□ -0.34
CPSF1-212ENST00000616140 C17orf67Q0P5P2 114 aa12.9□□□□□ -0.34
CPSF1-212ENST00000616140 SLC36A2Q495M3 483 aa12.9□□□□□ -0.34
CPSF1-212ENST00000616140 SYT9Q86SS6 491 aa12.9□□□□□ -0.34
CPSF1-212ENST00000616140 GIMAP5Q96F15 307 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms