RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 DSPPQ9NZW4 1301 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 RPL36A-HNRNPH2H7BZ11 118 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 M0R233 179 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 RFXANKO14593 260 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 PPIHO43447 177 aaKnown RBP7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 VAMP5O95183 116 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 CLPTM1O96005 669 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 ERCC1P07992 297 aaPredicted RBP7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 MSMBP08118 114 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 FAM157BP0CG42 384 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 GAAP10253 952 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 SAGP10523 405 aaPredicted RBP7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 KITP10721 976 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 CCL2P13500 99 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 GTF2E2P29084 291 aaKnown RBP7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 ARR3P36575 388 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 GIPRP48546 466 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 PTDSS1P48651 473 aaKnown RBP7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 DSTNP60981 165 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 ERVS71-1P61550 626 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 MVKQ03426 396 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 RAB39AQ14964 217 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 GLIPR1L2Q4G1C9 344 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 ZNF311Q5JNZ3 666 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 SHQ1Q6PI26 577 aaKnown RBP7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 ZNF813Q6ZN06 617 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 ZNF440Q8IYI8 595 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 C10orf111Q8N326 155 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 RIBC1Q8N443 379 aaPredicted RBP7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 PAQR4Q8N4S7 273 aaPredicted RBP7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 TRIML2Q8N7C3 387 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 OR9I1Q8NGQ6 314 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 MFSD8Q8NHS3 518 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 STK35Q8TDR2 534 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 GCDHQ92947 438 aaPredicted RBP7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 ZNF75AQ96N20 296 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 OXGR1Q96P68 337 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 SLC6A7Q99884 636 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 PAIP2Q9BPZ3 127 aaKnown RBP7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 WFDC6Q9BQY6 131 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 C1QTNF5Q9BXJ0 243 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 RACGAP1Q9H0H5 632 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 ZNF696Q9H7X3 374 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 MEAF6Q9HAF1 191 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 ESM1Q9NQ30 184 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 B3GNT2Q9NY97 397 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 SPEF1Q9Y4P9 236 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 PCDHB14Q9Y5E9 798 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 GPR45Q9Y5Y3 372 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 CACNG2Q9Y698 323 aa7.41□□□□□ -1.22
SHKBP1-220ENST00000599716 A0A1B0GWA3 101 aa7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 A0A1W2PPW3 197 aa7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 ZNF99A8MXY4 864 aaPredicted RBP7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 MS4A18H0YCH9 400 aa7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 SYNGR3O43761 229 aa7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 TPST1O60507 370 aa7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 RP2O75695 350 aa7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 ZNF35P13682 527 aa7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 ZNF14P17017 642 aaPredicted RBP7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 EPHA1P21709 976 aa7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 MAP2K6P52564 334 aa7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 CRISP3P54108 245 aa7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 SH3BGRP55822 239 aaPredicted RBP7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 LMO4P61968 165 aa7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 POU3F1Q03052 451 aaPredicted RBP7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 GLO1Q04760 184 aa7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 BST1Q10588 318 aa7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 MFSD13AQ14CX5 517 aa7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 LARS2Q15031 903 aaKnown RBP7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 GSG1Q2KHT4 349 aa7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 DPY19L1Q2PZI1 675 aa7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 MS4A18Q3C1V0 323 aa7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 C3orf36Q3SXR2 165 aa7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 RNF220Q5VTB9 566 aa7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 NXNQ6DKJ4 435 aa7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 C20orf196Q8IYI0 205 aa7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 MIER2Q8N344 545 aa7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 FAM169BQ8N8A8 192 aa7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 MOGAT1Q96PD6 335 aa7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 ZIM3Q96PE6 472 aa7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 DUX5Q96PT3 197 aa7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 SPATA9Q9BWV2 254 aa7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 TPT1P8Q9HAU6 139 aa7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 PCDHB10Q9UN67 800 aa7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 USP22Q9UPT9 525 aa7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 RCE1Q9Y256 329 aa7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 V9GYY5 206 aaPredicted RBP7.4□□□□□ -1.22
SHKBP1-220ENST00000599716 VSTM5A8MXK1 200 aa7.39□□□□□ -1.23
SHKBP1-220ENST00000599716 C11orf98E9PRG8 122 aa7.39□□□□□ -1.23
SHKBP1-220ENST00000599716 AIM2O14862 343 aa7.39□□□□□ -1.23
SHKBP1-220ENST00000599716 ANP32DO95626 131 aa7.39□□□□□ -1.23
SHKBP1-220ENST00000599716 KRT75O95678 551 aa7.39□□□□□ -1.23
SHKBP1-220ENST00000599716 NQO1P15559 274 aaKnown RBP7.39□□□□□ -1.23
SHKBP1-220ENST00000599716 ANXA11P50995 505 aaKnown RBP7.39□□□□□ -1.23
SHKBP1-220ENST00000599716 RAB1AP62820 205 aa7.39□□□□□ -1.23
SHKBP1-220ENST00000599716 CCL8P80075 99 aa7.39□□□□□ -1.23
SHKBP1-220ENST00000599716 STX3Q13277 289 aa7.39□□□□□ -1.23
SHKBP1-220ENST00000599716 TRMT5Q32P41 509 aaKnown RBP7.39□□□□□ -1.23
SHKBP1-220ENST00000599716 KRT71Q3SY84 523 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms