RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 BSPH1Q075Z2 132 aa12.25□□□□□ -0.45
SHKBP1-218ENST00000598907 ST3GAL3Q11203 375 aa12.25□□□□□ -0.45
SHKBP1-218ENST00000598907 TSC22D1Q15714 1073 aa12.25□□□□□ -0.45
SHKBP1-218ENST00000598907 CR1LQ2VPA4 569 aa12.25□□□□□ -0.45
SHKBP1-218ENST00000598907 SWT1Q5T5J6 900 aaKnown RBP12.25□□□□□ -0.45
SHKBP1-218ENST00000598907 ULK3Q6PHR2 472 aa12.25□□□□□ -0.45
SHKBP1-218ENST00000598907 GRINAQ7Z429 371 aa12.25□□□□□ -0.45
SHKBP1-218ENST00000598907 ZNF563Q8TA94 476 aa12.25□□□□□ -0.45
SHKBP1-218ENST00000598907 DNAJA4Q8WW22 397 aaPredicted RBP12.25□□□□□ -0.45
SHKBP1-218ENST00000598907 TMEM234Q8WY98 164 aa12.25□□□□□ -0.45
SHKBP1-218ENST00000598907 LRTOMTQ8WZ04 291 aa12.25□□□□□ -0.45
SHKBP1-218ENST00000598907 SLC38A4Q969I6 547 aa12.25□□□□□ -0.45
SHKBP1-218ENST00000598907 ZBTB8AQ96BR9 441 aa12.25□□□□□ -0.45
SHKBP1-218ENST00000598907 MSI2Q96DH6 328 aaKnown RBP12.25□□□□□ -0.45
SHKBP1-218ENST00000598907 SLC41A3Q96GZ6 507 aa12.25□□□□□ -0.45
SHKBP1-218ENST00000598907 PKP2Q99959 881 aa12.25□□□□□ -0.45
SHKBP1-218ENST00000598907 ANKRD19PQ9H560 264 aa12.25□□□□□ -0.45
SHKBP1-218ENST00000598907 DCLRE1BQ9H816 532 aa12.25□□□□□ -0.45
SHKBP1-218ENST00000598907 NMNAT1Q9HAN9 279 aaPredicted RBP12.25□□□□□ -0.45
SHKBP1-218ENST00000598907 CTPS2Q9NRF8 586 aa12.25□□□□□ -0.45
SHKBP1-218ENST00000598907 FAIMQ9NVQ4 179 aa12.25□□□□□ -0.45
SHKBP1-218ENST00000598907 VNN3Q9NY84 501 aa12.25□□□□□ -0.45
SHKBP1-218ENST00000598907 RHCGQ9UBD6 479 aa12.25□□□□□ -0.45
SHKBP1-218ENST00000598907 EMC9Q9Y3B6 208 aa12.25□□□□□ -0.45
SHKBP1-218ENST00000598907 A0A1W2PRQ8 180 aa12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 ADAMDEC1O15204 470 aa12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 CHP2O43745 196 aa12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 EFNA2O43921 213 aa12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 DEAF1O75398 565 aaPredicted RBP12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 AQP8O94778 261 aa12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 VENTXO95231 258 aa12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 NUDT14O95848 222 aa12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 PLGP00747 810 aaPredicted RBP12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 TACR3P29371 465 aa12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 RRM2P31350 389 aa12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 EIF1P41567 113 aaKnown RBP12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 HTR3AP46098 478 aa12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 SUCLG1P53597 346 aaKnown RBP12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 CLDN15P56746 228 aa12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 B3GALT5-AS1P59052 145 aa12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 DGCR6Q14129 220 aa12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 GK3PQ14409 553 aa12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 GUSBP1Q15486 140 aa12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 MIDNQ504T8 468 aa12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 WDR88Q6ZMY6 472 aa12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 ALPK2Q86TB3 2170 aa12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 ADGRG3Q86Y34 549 aa12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 NKAIN4Q8IVV8 208 aa12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 CADM2Q8N3J6 435 aa12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 GTPBP8Q8N3Z3 284 aaPredicted RBP12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 OR4C15Q8NGM1 316 aa12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 DTNBP1Q96EV8 351 aa12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 MPP4Q96JB8 637 aa12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 MRGPRX4Q96LA9 322 aa12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 ZNF426Q9BUY5 554 aa12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 FNDC11Q9BVV2 318 aa12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 CISD1Q9NZ45 108 aaKnown RBP12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 STX18Q9P2W9 335 aaKnown RBP12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 OSGIN1Q9UJX0 560 aa12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 SLC7A7Q9UM01 511 aa12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 VDAC3Q9Y277 283 aa12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 LYVE1Q9Y5Y7 322 aa12.24□□□□□ -0.45
SHKBP1-218ENST00000598907 A0A087WUJ7 227 aa12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 RAMP1O60894 148 aa12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 H1F0P07305 194 aaKnown RBP12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 PEPDP12955 493 aa12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 ANPEPP15144 967 aa12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 ZNF17P17021 662 aa12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 HK1P19367 917 aa12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 IFNA8P32881 189 aa12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 APOBEC1P41238 236 aaKnown RBP12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 POLR2HP52434 150 aaKnown RBP12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 CDH11P55287 796 aa12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 CTBP2P56545 445 aa12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 SMIM11AP58511 58 aa12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 SPIBQ01892 262 aa12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 FOXF1Q12946 379 aa12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 TRAM2Q15035 370 aa12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 RCN1Q15293 331 aa12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 ALG10BQ5I7T1 473 aa12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 RAET1LQ5VY80 246 aa12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 TMEM179BQ7Z7N9 219 aa12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 DTX2Q86UW9 622 aa12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 PQLC1Q8N2U9 271 aa12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 OR5M1Q8NGP8 315 aa12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 OR6K3Q8NGY3 331 aa12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 C10orf105Q8TEF2 133 aa12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 CENPNQ96H22 339 aaPredicted RBP12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 EPYCQ99645 322 aa12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 OCEL1Q9H607 264 aa12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 C12orf49Q9H741 205 aa12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 FANCFQ9NPI8 374 aa12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 RPS6KB2Q9UBS0 482 aa12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 ZNF175Q9Y473 711 aa12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 TRRAPQ9Y4A5 3859 aa12.23□□□□□ -0.45
SHKBP1-218ENST00000598907 PRKDCP78527 4128 aaKnown RBP12.22□□□□□ -0.45
SHKBP1-218ENST00000598907 H3BML4 177 aa12.22□□□□□ -0.45
SHKBP1-218ENST00000598907 RGS9O75916 674 aaPredicted RBP12.22□□□□□ -0.45
SHKBP1-218ENST00000598907 LY6HO94772 140 aa12.22□□□□□ -0.45
SHKBP1-218ENST00000598907 GADD45GO95257 159 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms