RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 KDM4EB2RXH2 506 aaPredicted RBP13.63□□□□□ -0.23
TRIM28-209ENST00000597423 GPR171O14626 319 aa13.63□□□□□ -0.23
TRIM28-209ENST00000597423 PRODHO43272 600 aa13.63□□□□□ -0.23
TRIM28-209ENST00000597423 ARHGEF9O43307 516 aa13.63□□□□□ -0.23
TRIM28-209ENST00000597423 MRPS14O60783 128 aaKnown RBP13.63□□□□□ -0.23
TRIM28-209ENST00000597423 ENTPD6O75354 484 aa13.63□□□□□ -0.23
TRIM28-209ENST00000597423 WBP4O75554 376 aaKnown RBP13.63□□□□□ -0.23
TRIM28-209ENST00000597423 LYNP07948 512 aa13.63□□□□□ -0.23
TRIM28-209ENST00000597423 NR2C1P13056 603 aa13.63□□□□□ -0.23
TRIM28-209ENST00000597423 IFNGR1P15260 489 aa13.63□□□□□ -0.23
TRIM28-209ENST00000597423 FMO3P31513 532 aa13.63□□□□□ -0.23
TRIM28-209ENST00000597423 P2RY4P51582 365 aa13.63□□□□□ -0.23
TRIM28-209ENST00000597423 SLC25A1P53007 311 aa13.63□□□□□ -0.23
TRIM28-209ENST00000597423 MLLT10P55197 1068 aa13.63□□□□□ -0.23
TRIM28-209ENST00000597423 C19orf57Q0VDD7 668 aa13.63□□□□□ -0.23
TRIM28-209ENST00000597423 KRR1Q13601 381 aaKnown RBP13.63□□□□□ -0.23
TRIM28-209ENST00000597423 NADK2Q4G0N4 442 aa13.63□□□□□ -0.23
TRIM28-209ENST00000597423 KLHL22Q53GT1 634 aa13.63□□□□□ -0.23
TRIM28-209ENST00000597423 PLBD1Q6P4A8 553 aa13.63□□□□□ -0.23
TRIM28-209ENST00000597423 CCDC103Q8IW40 242 aa13.63□□□□□ -0.23
TRIM28-209ENST00000597423 GHDCQ8N2G8 530 aa13.63□□□□□ -0.23
TRIM28-209ENST00000597423 EXD3Q8N9H8 876 aa13.63□□□□□ -0.23
TRIM28-209ENST00000597423 SLC37A3Q8NCC5 494 aa13.63□□□□□ -0.23
TRIM28-209ENST00000597423 LSM14AQ8ND56 463 aaKnown RBP13.63□□□□□ -0.23
TRIM28-209ENST00000597423 ZNF540Q8NDQ6 660 aa13.63□□□□□ -0.23
TRIM28-209ENST00000597423 FNDC8Q8TC99 324 aa13.63□□□□□ -0.23
TRIM28-209ENST00000597423 WDYHV1Q96HA8 205 aa13.63□□□□□ -0.23
TRIM28-209ENST00000597423 ZNF582Q96NG8 517 aaPredicted RBP13.63□□□□□ -0.23
TRIM28-209ENST00000597423 TSPAN32Q96QS1 320 aa13.63□□□□□ -0.23
TRIM28-209ENST00000597423 SLC25A18Q9H1K4 315 aa13.63□□□□□ -0.23
TRIM28-209ENST00000597423 ZNF696Q9H7X3 374 aa13.63□□□□□ -0.23
TRIM28-209ENST00000597423 CCNB1IP1Q9NPC3 277 aa13.63□□□□□ -0.23
TRIM28-209ENST00000597423 PLSCR2Q9NRY7 297 aa13.63□□□□□ -0.23
TRIM28-209ENST00000597423 ZMIZ1Q9ULJ6 1067 aa13.63□□□□□ -0.23
TRIM28-209ENST00000597423 GPR52Q9Y2T5 361 aa13.63□□□□□ -0.23
TRIM28-209ENST00000597423 LIPGQ9Y5X9 500 aa13.63□□□□□ -0.23
TRIM28-209ENST00000597423 NCOR2Q9Y618 2525 aa13.63□□□□□ -0.23
TRIM28-209ENST00000597423 AHRRA9YTQ3 701 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 CENPBD1B2RD01 187 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 PTGES3LE9PB15 166 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 H0YC42 278 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 SLC1A7O00341 560 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 SLC2A10O95528 541 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 PLGP00747 810 aaPredicted RBP13.62□□□□□ -0.23
TRIM28-209ENST00000597423 FCGR2AP12318 317 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 CRHBPP24387 322 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 CENPAP49450 140 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 GABARAPL2P60520 117 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 KLRB1Q12918 225 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 PON3Q15166 354 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 RNPS1Q15287 305 aaKnown RBP13.62□□□□□ -0.23
TRIM28-209ENST00000597423 ZNF362Q5T0B9 420 aaPredicted RBP13.62□□□□□ -0.23
TRIM28-209ENST00000597423 ARMC4Q5T2S8 1044 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 AADACL4Q5VUY2 407 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 LEG1Q6P5S2 330 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 MEPCEQ7L2J0 689 aaKnown RBP13.62□□□□□ -0.23
TRIM28-209ENST00000597423 FCRLAQ7L513 359 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 MCEMP1Q8IX19 187 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 NPEPL1Q8NDH3 523 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 OR9K2Q8NGE7 335 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 OR2T4Q8NH00 348 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 OR6X1Q8NH79 312 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 ZPLD1Q8TCW7 415 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 APH1BQ8WW43 257 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 RASD2Q96D21 266 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 GPR137Q96N19 417 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 RBP7Q96R05 134 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 SRXN1Q9BYN0 137 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 TSPAN10Q9H1Z9 355 aaPredicted RBP13.62□□□□□ -0.23
TRIM28-209ENST00000597423 CNOT2Q9NZN8 540 aaKnown RBP13.62□□□□□ -0.23
TRIM28-209ENST00000597423 DNAJC27Q9NZQ0 273 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 EMC3Q9P0I2 261 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 SPRR3Q9UBC9 169 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 WARS2Q9UGM6 360 aaKnown RBP13.62□□□□□ -0.23
TRIM28-209ENST00000597423 SCOCQ9UIL1 159 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 MOKQ9UQ07 419 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 ZNF175Q9Y473 711 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 PCDHGB5Q9Y5G0 923 aa13.62□□□□□ -0.23
TRIM28-209ENST00000597423 A0A087WXM4 84 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 SLC22A31A6NKX4 558 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 CLCA1A8K7I4 914 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 M0R129 80 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 SMAD9O15198 467 aaKnown RBP13.61□□□□□ -0.23
TRIM28-209ENST00000597423 CYTIPO60759 359 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 SMNDC1O75940 238 aaKnown RBP eCLIP13.61□□□□□ -0.23
TRIM28-209ENST00000597423 IGHG1P01857 330 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 CRABP1P29762 137 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 HTR1FP30939 366 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 ATP6V1E1P36543 226 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 CDKN2AP42771 156 aaKnown RBP13.61□□□□□ -0.23
TRIM28-209ENST00000597423 BLVRAP53004 296 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 CDH11P55287 796 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 BIDP55957 195 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 RASGEF1BQ0VAM2 473 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 CRMP1Q14194 572 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 SLC17A1Q14916 467 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 SLC35D3Q5M8T2 416 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 LCN1P1Q5VSP4 162 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 DNM1P34Q6PK57 102 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 CREB3L2Q70SY1 520 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms