RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 CYP2R1Q6VVX0 501 aa13.22□□□□□ -0.29
UPF1-202ENST00000594243 MBOAT2Q6ZWT7 520 aa13.22□□□□□ -0.29
UPF1-202ENST00000594243 C17orf78Q8N4C9 275 aa13.22□□□□□ -0.29
UPF1-202ENST00000594243 BOD1Q96IK1 185 aa13.22□□□□□ -0.29
UPF1-202ENST00000594243 TXNDC15Q96J42 360 aa13.22□□□□□ -0.29
UPF1-202ENST00000594243 LRR1Q96L50 414 aa13.22□□□□□ -0.29
UPF1-202ENST00000594243 OR2M2Q96R28 347 aa13.22□□□□□ -0.29
UPF1-202ENST00000594243 ZNF347Q96SE7 839 aa13.22□□□□□ -0.29
UPF1-202ENST00000594243 PIP5K1AQ99755 562 aa13.22□□□□□ -0.29
UPF1-202ENST00000594243 THTPAQ9BU02 230 aa13.22□□□□□ -0.29
UPF1-202ENST00000594243 EMC6Q9BV81 110 aa13.22□□□□□ -0.29
UPF1-202ENST00000594243 MED29Q9NX70 200 aa13.22□□□□□ -0.29
UPF1-202ENST00000594243 V9GYQ6 96 aa13.22□□□□□ -0.29
UPF1-202ENST00000594243 ADGRG4Q8IZF6 3080 aa13.21□□□□□ -0.29
UPF1-202ENST00000594243 APCP25054 2843 aa13.21□□□□□ -0.29
UPF1-202ENST00000594243 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.21□□□□□ -0.29
UPF1-202ENST00000594243 PDE5AO76074 875 aa13.21□□□□□ -0.29
UPF1-202ENST00000594243 SAGP10523 405 aaPredicted RBP13.21□□□□□ -0.29
UPF1-202ENST00000594243 IFNGR1P15260 489 aa13.21□□□□□ -0.29
UPF1-202ENST00000594243 HOXC12P31275 282 aa13.21□□□□□ -0.29
UPF1-202ENST00000594243 RASSF2P50749 326 aa13.21□□□□□ -0.29
UPF1-202ENST00000594243 ROR2Q01974 943 aaKnown RBP13.21□□□□□ -0.29
UPF1-202ENST00000594243 LCN8Q6JVE9 175 aa13.21□□□□□ -0.29
UPF1-202ENST00000594243 SLC35D2Q76EJ3 337 aa13.21□□□□□ -0.29
UPF1-202ENST00000594243 NRMQ8IXM6 262 aa13.21□□□□□ -0.29
UPF1-202ENST00000594243 TMEM123Q8N131 208 aa13.21□□□□□ -0.29
UPF1-202ENST00000594243 OR6X1Q8NH79 312 aa13.21□□□□□ -0.29
UPF1-202ENST00000594243 ASB9Q96DX5 294 aa13.21□□□□□ -0.29
UPF1-202ENST00000594243 PLPPR2Q96GM1 343 aa13.21□□□□□ -0.29
UPF1-202ENST00000594243 BTBD10Q9BSF8 475 aa13.21□□□□□ -0.29
UPF1-202ENST00000594243 ESRP2Q9H6T0 727 aaKnown RBP13.21□□□□□ -0.29
UPF1-202ENST00000594243 IL1RAPQ9NPH3 570 aa13.21□□□□□ -0.29
UPF1-202ENST00000594243 KRCC1Q9NPI7 259 aaPredicted RBP13.21□□□□□ -0.29
UPF1-202ENST00000594243 B3GAT2Q9NPZ5 323 aa13.21□□□□□ -0.29
UPF1-202ENST00000594243 A0A1W2PRG6 482 aa13.2□□□□□ -0.3
UPF1-202ENST00000594243 SIAH2O43255 324 aa13.2□□□□□ -0.3
UPF1-202ENST00000594243 PIP5K1CO60331 668 aa13.2□□□□□ -0.3
UPF1-202ENST00000594243 ATP5HO75947 161 aa13.2□□□□□ -0.3
UPF1-202ENST00000594243 GADD45GO95257 159 aa13.2□□□□□ -0.3
UPF1-202ENST00000594243 BCL10O95999 233 aa13.2□□□□□ -0.3
UPF1-202ENST00000594243 TSPAN19P0C672 248 aa13.2□□□□□ -0.3
UPF1-202ENST00000594243 CDH2P19022 906 aaPredicted RBP13.2□□□□□ -0.3
UPF1-202ENST00000594243 FUT4P22083 530 aa13.2□□□□□ -0.3
UPF1-202ENST00000594243 PAX7P23759 505 aa13.2□□□□□ -0.3
UPF1-202ENST00000594243 SLC9A3P48764 834 aa13.2□□□□□ -0.3
UPF1-202ENST00000594243 SH3BGRP55822 239 aaPredicted RBP13.2□□□□□ -0.3
UPF1-202ENST00000594243 BIDP55957 195 aa13.2□□□□□ -0.3
UPF1-202ENST00000594243 MS4A2Q01362 244 aa13.2□□□□□ -0.3
UPF1-202ENST00000594243 RPL18Q07020 188 aaKnown RBP13.2□□□□□ -0.3
UPF1-202ENST00000594243 LGALS3BPQ08380 585 aa13.2□□□□□ -0.3
UPF1-202ENST00000594243 TRAP1Q12931 704 aaKnown RBP13.2□□□□□ -0.3
UPF1-202ENST00000594243 CAMK2DQ13557 499 aa13.2□□□□□ -0.3
UPF1-202ENST00000594243 IQCCQ4KMZ1 466 aa13.2□□□□□ -0.3
UPF1-202ENST00000594243 FGD3Q5JSP0 725 aa13.2□□□□□ -0.3
UPF1-202ENST00000594243 CARD17Q5XLA6 110 aa13.2□□□□□ -0.3
UPF1-202ENST00000594243 TBPL2Q6SJ96 375 aa13.2□□□□□ -0.3
UPF1-202ENST00000594243 TMPRSS11FQ6ZWK6 438 aa13.2□□□□□ -0.3
UPF1-202ENST00000594243 C20orf196Q8IYI0 205 aa13.2□□□□□ -0.3
UPF1-202ENST00000594243 OR6N1Q8NGY5 312 aa13.2□□□□□ -0.3
UPF1-202ENST00000594243 OR52N5Q8NH56 324 aa13.2□□□□□ -0.3
UPF1-202ENST00000594243 SLC7A13Q8TCU3 470 aa13.2□□□□□ -0.3
UPF1-202ENST00000594243 SLC7A6OSQ96CW6 309 aaPredicted RBP13.2□□□□□ -0.3
UPF1-202ENST00000594243 LRGUKQ96M69 825 aa13.2□□□□□ -0.3
UPF1-202ENST00000594243 ALKBH3Q96Q83 286 aaPredicted RBP13.2□□□□□ -0.3
UPF1-202ENST00000594243 PLEKHF2Q9H8W4 249 aa13.2□□□□□ -0.3
UPF1-202ENST00000594243 SLC17A5Q9NRA2 495 aa13.2□□□□□ -0.3
UPF1-202ENST00000594243 INIPQ9NRY2 104 aa13.2□□□□□ -0.3
UPF1-202ENST00000594243 TMEM5Q9Y2B1 443 aa13.2□□□□□ -0.3
UPF1-202ENST00000594243 HIF3AQ9Y2N7 669 aa13.2□□□□□ -0.3
UPF1-202ENST00000594243 AMDHD2Q9Y303 409 aa13.2□□□□□ -0.3
UPF1-202ENST00000594243 MPDZO75970 2070 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 CSMD1Q96PZ7 3565 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 EFCAB9A8MZ26 197 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 M0R3G1 203 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 DNAJC8O75937 253 aaPredicted RBP13.19□□□□□ -0.3
UPF1-202ENST00000594243 DIRAS1O95057 198 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 WNT11O96014 354 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 F13BP05160 661 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 HOXB1P14653 301 aaPredicted RBP13.19□□□□□ -0.3
UPF1-202ENST00000594243 MAKP20794 623 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 ATP6V1B2P21281 511 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 AQP2P41181 271 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 PRPS1P60891 318 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 LSM11P83369 360 aaKnown RBP eCLIP13.19□□□□□ -0.3
UPF1-202ENST00000594243 BNIP1Q12981 228 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 LAPTM4AQ15012 233 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 ALG10Q5BKT4 473 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 NCMAPQ5T1S8 102 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 ANKRD16Q6P6B7 361 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 PODNL1Q6PEZ8 512 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 KLHL17Q6TDP4 642 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 KLHL24Q6TFL4 600 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 LINGO2Q7L985 606 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 PIWIL3Q7Z3Z3 882 aaKnown RBP13.19□□□□□ -0.3
UPF1-202ENST00000594243 HDDC2Q7Z4H3 204 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 OAFQ86UD1 273 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 CDH24Q86UP0 819 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 ZDHHC21Q8IVQ6 265 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 OR1K1Q8NGR3 316 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 ZNF566Q969W8 418 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms