RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 FAM205BPQ63HN1 556 aa14.39□□□□□ -0.11
SS18-211ENST00000578954 SLC35D2Q76EJ3 337 aa14.39□□□□□ -0.11
SS18-211ENST00000578954 FCRLAQ7L513 359 aa14.39□□□□□ -0.11
SS18-211ENST00000578954 FAM26EQ8N5C1 309 aa14.39□□□□□ -0.11
SS18-211ENST00000578954 ARIH2OSQ8N7S6 290 aa14.39□□□□□ -0.11
SS18-211ENST00000578954 OR9K2Q8NGE7 335 aa14.39□□□□□ -0.11
SS18-211ENST00000578954 TMEM163Q8TC26 289 aa14.39□□□□□ -0.11
SS18-211ENST00000578954 APH1BQ8WW43 257 aa14.39□□□□□ -0.11
SS18-211ENST00000578954 ASB10Q8WXI3 467 aa14.39□□□□□ -0.11
SS18-211ENST00000578954 UBE2FQ969M7 185 aa14.39□□□□□ -0.11
SS18-211ENST00000578954 CNBD2Q96M20 576 aa14.39□□□□□ -0.11
SS18-211ENST00000578954 RNF122Q9H9V4 155 aa14.39□□□□□ -0.11
SS18-211ENST00000578954 ASF1BQ9NVP2 202 aa14.39□□□□□ -0.11
SS18-211ENST00000578954 IMPAD1Q9NX62 359 aa14.39□□□□□ -0.11
SS18-211ENST00000578954 UBAP1Q9NZ09 502 aa14.39□□□□□ -0.11
SS18-211ENST00000578954 CLCF1Q9UBD9 225 aa14.39□□□□□ -0.11
SS18-211ENST00000578954 ING1Q9UK53 422 aaPredicted RBP14.39□□□□□ -0.11
SS18-211ENST00000578954 BOD1L1Q8NFC6 3051 aa14.38□□□□□ -0.11
SS18-211ENST00000578954 TEX13CA0A0J9YWL9 993 aa14.38□□□□□ -0.11
SS18-211ENST00000578954 CLCA1A8K7I4 914 aa14.38□□□□□ -0.11
SS18-211ENST00000578954 AHRRA9YTQ3 701 aa14.38□□□□□ -0.11
SS18-211ENST00000578954 M0R129 80 aa14.38□□□□□ -0.11
SS18-211ENST00000578954 WBP4O75554 376 aaKnown RBP14.38□□□□□ -0.11
SS18-211ENST00000578954 PLGP00747 810 aaPredicted RBP14.38□□□□□ -0.11
SS18-211ENST00000578954 IFNGP01579 166 aa14.38□□□□□ -0.11
SS18-211ENST00000578954 IFNGR1P15260 489 aa14.38□□□□□ -0.11
SS18-211ENST00000578954 HIST1H1CP16403 213 aaKnown RBP14.38□□□□□ -0.11
SS18-211ENST00000578954 ZNF43P17038 809 aa14.38□□□□□ -0.11
SS18-211ENST00000578954 PTGS2P35354 604 aa14.38□□□□□ -0.11
SS18-211ENST00000578954 IL5RAQ01344 420 aa14.38□□□□□ -0.11
SS18-211ENST00000578954 KRR1Q13601 381 aaKnown RBP14.38□□□□□ -0.11
SS18-211ENST00000578954 PON3Q15166 354 aa14.38□□□□□ -0.11
SS18-211ENST00000578954 OCLNQ16625 522 aa14.38□□□□□ -0.11
SS18-211ENST00000578954 PRR30Q53SZ7 412 aaPredicted RBP14.38□□□□□ -0.11
SS18-211ENST00000578954 MESTQ5EB52 335 aa14.38□□□□□ -0.11
SS18-211ENST00000578954 LAIR2Q6ISS4 152 aa14.38□□□□□ -0.11
SS18-211ENST00000578954 CREB3L2Q70SY1 520 aa14.38□□□□□ -0.11
SS18-211ENST00000578954 CHMP1BQ7LBR1 199 aa14.38□□□□□ -0.11
SS18-211ENST00000578954 ADCK1Q86TW2 530 aa14.38□□□□□ -0.11
SS18-211ENST00000578954 TCEANCQ8N8B7 351 aa14.38□□□□□ -0.11
SS18-211ENST00000578954 ROBO4Q8WZ75 1007 aa14.38□□□□□ -0.11
SS18-211ENST00000578954 RASD2Q96D21 266 aa14.38□□□□□ -0.11
SS18-211ENST00000578954 GP6Q9HCN6 339 aa14.38□□□□□ -0.11
SS18-211ENST00000578954 GRHPRQ9UBQ7 328 aa14.38□□□□□ -0.11
SS18-211ENST00000578954 SVILO95425 2214 aa14.38□□□□□ -0.11
SS18-211ENST00000578954 A6NIZ1 184 aa14.37□□□□□ -0.11
SS18-211ENST00000578954 RIIAD1A6NNX1 92 aa14.37□□□□□ -0.11
SS18-211ENST00000578954 CENPBD1B2RD01 187 aa14.37□□□□□ -0.11
SS18-211ENST00000578954 SLC2A10O95528 541 aa14.37□□□□□ -0.11
SS18-211ENST00000578954 BCL10O95999 233 aa14.37□□□□□ -0.11
SS18-211ENST00000578954 FCGR2AP12318 317 aa14.37□□□□□ -0.11
SS18-211ENST00000578954 ZNF3P17036 446 aa14.37□□□□□ -0.11
SS18-211ENST00000578954 NOS3P29474 1203 aa14.37□□□□□ -0.11
SS18-211ENST00000578954 PTGER4P35408 488 aa14.37□□□□□ -0.11
SS18-211ENST00000578954 RAP1BP61224 184 aa14.37□□□□□ -0.11
SS18-211ENST00000578954 RAP1AP62834 184 aa14.37□□□□□ -0.11
SS18-211ENST00000578954 KHDRBS1Q07666 443 aaKnown RBP eCLIP14.37□□□□□ -0.11
SS18-211ENST00000578954 CDK5R2Q13319 367 aa14.37□□□□□ -0.11
SS18-211ENST00000578954 TOP3AQ13472 1001 aaPredicted RBP14.37□□□□□ -0.11
SS18-211ENST00000578954 SLC35F1Q5T1Q4 408 aa14.37□□□□□ -0.11
SS18-211ENST00000578954 KRT80Q6KB66 452 aa14.37□□□□□ -0.11
SS18-211ENST00000578954 PTCHD4Q6ZW05 846 aa14.37□□□□□ -0.11
SS18-211ENST00000578954 HDDC2Q7Z4H3 204 aa14.37□□□□□ -0.11
SS18-211ENST00000578954 GPAT4Q86UL3 456 aa14.37□□□□□ -0.11
SS18-211ENST00000578954 ZIC4Q8N9L1 334 aa14.37□□□□□ -0.11
SS18-211ENST00000578954 SLC37A3Q8NCC5 494 aa14.37□□□□□ -0.11
SS18-211ENST00000578954 NPEPL1Q8NDH3 523 aa14.37□□□□□ -0.11
SS18-211ENST00000578954 FNDC9Q8TBE3 224 aa14.37□□□□□ -0.11
SS18-211ENST00000578954 PLEKHA8Q96JA3 519 aa14.37□□□□□ -0.11
SS18-211ENST00000578954 ADAD1Q96M93 576 aaKnown RBP14.37□□□□□ -0.11
SS18-211ENST00000578954 BCO1Q9HAY6 547 aa14.37□□□□□ -0.11
SS18-211ENST00000578954 HINT3Q9NQE9 182 aaKnown RBP14.37□□□□□ -0.11
SS18-211ENST00000578954 PNPLA3Q9NST1 481 aa14.37□□□□□ -0.11
SS18-211ENST00000578954 KLHL13Q9P2N7 655 aa14.37□□□□□ -0.11
SS18-211ENST00000578954 RCE1Q9Y256 329 aa14.37□□□□□ -0.11
SS18-211ENST00000578954 ZNF835Q9Y2P0 537 aa14.37□□□□□ -0.11
SS18-211ENST00000578954 PCDHGB5Q9Y5G0 923 aa14.37□□□□□ -0.11
SS18-211ENST00000578954 FLVCR1Q9Y5Y0 555 aa14.37□□□□□ -0.11
SS18-211ENST00000578954 ALPK2Q86TB3 2170 aa14.37□□□□□ -0.11
SS18-211ENST00000578954 GTF3C1Q12789 2109 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 CD8B2A6NJW9 211 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 ZNF724A8MTY0 619 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 KDM4EB2RXH2 506 aaPredicted RBP14.36□□□□□ -0.11
SS18-211ENST00000578954 TLX2O43763 284 aaPredicted RBP14.36□□□□□ -0.11
SS18-211ENST00000578954 AHCYL1O43865 530 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 WDR1O75083 606 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 AQP8O94778 261 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 EDN3P14138 238 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 GABRA1P14867 456 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 ACVR1BP36896 505 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 CDKN2AP42771 156 aaKnown RBP14.36□□□□□ -0.11
SS18-211ENST00000578954 MLLT10P55197 1068 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 CXCR4P61073 352 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 RASGEF1BQ0VAM2 473 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 ITGADQ13349 1161 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 C1DQ13901 141 aaKnown RBP14.36□□□□□ -0.11
SS18-211ENST00000578954 CRMP1Q14194 572 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 MELKQ14680 651 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 RNPS1Q15287 305 aaKnown RBP14.36□□□□□ -0.11
SS18-211ENST00000578954 SF3B4Q15427 424 aaKnown RBP eCLIP14.36□□□□□ -0.114e-8■■■□□ 18.5
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms