RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 NCCRP1Q6ZVX7 275 aaPredicted RBP3.7□□□□□ -1.82
NUP88-213ENST00000576862 PLA2G4DQ86XP0 818 aa3.7□□□□□ -1.82
NUP88-213ENST00000576862 SLC34A3Q8N130 599 aa3.7□□□□□ -1.82
NUP88-213ENST00000576862 FAM58AQ8N1B3 248 aa3.7□□□□□ -1.82
NUP88-213ENST00000576862 ASCC1Q8N9N2 400 aaKnown RBP3.7□□□□□ -1.82
NUP88-213ENST00000576862 OR4F17Q8NGA8 305 aa3.7□□□□□ -1.82
NUP88-213ENST00000576862 OR4C5Q8NGB2 326 aa3.7□□□□□ -1.82
NUP88-213ENST00000576862 NDNFQ8TB73 568 aa3.7□□□□□ -1.82
NUP88-213ENST00000576862 UBA3Q8TBC4 463 aa3.7□□□□□ -1.82
NUP88-213ENST00000576862 TMEM37Q8WXS4 190 aa3.7□□□□□ -1.82
NUP88-213ENST00000576862 PPP1R14BQ96C90 147 aa3.7□□□□□ -1.82
NUP88-213ENST00000576862 FAM122AQ96E09 287 aa3.7□□□□□ -1.82
NUP88-213ENST00000576862 NUS1Q96E22 293 aa3.7□□□□□ -1.82
NUP88-213ENST00000576862 CASD1Q96PB1 797 aa3.7□□□□□ -1.82
NUP88-213ENST00000576862 DEFB118Q96PH6 123 aa3.7□□□□□ -1.82
NUP88-213ENST00000576862 OR4F4Q96R69 305 aa3.7□□□□□ -1.82
NUP88-213ENST00000576862 NPY6RQ99463 290 aa3.7□□□□□ -1.82
NUP88-213ENST00000576862 BPIFA3Q9BQP9 254 aa3.7□□□□□ -1.82
NUP88-213ENST00000576862 IL22Q9GZX6 179 aa3.7□□□□□ -1.82
NUP88-213ENST00000576862 TMEM231Q9H6L2 316 aa3.7□□□□□ -1.82
NUP88-213ENST00000576862 ALG9Q9H6U8 611 aa3.7□□□□□ -1.82
NUP88-213ENST00000576862 WDR76Q9H967 626 aa3.7□□□□□ -1.82
NUP88-213ENST00000576862 ROPN1Q9HAT0 212 aaPredicted RBP3.7□□□□□ -1.82
NUP88-213ENST00000576862 MRM3Q9HC36 420 aaKnown RBP3.7□□□□□ -1.82
NUP88-213ENST00000576862 RRAGDQ9NQL2 400 aaPredicted RBP3.7□□□□□ -1.82
NUP88-213ENST00000576862 IL37Q9NZH6 218 aa3.7□□□□□ -1.82
NUP88-213ENST00000576862 CNOT2Q9NZN8 540 aaKnown RBP3.7□□□□□ -1.82
NUP88-213ENST00000576862 COPS7AQ9UBW8 275 aa3.7□□□□□ -1.82
NUP88-213ENST00000576862 IL20RAQ9UHF4 553 aa3.7□□□□□ -1.82
NUP88-213ENST00000576862 CYTH4Q9UIA0 394 aa3.7□□□□□ -1.82
NUP88-213ENST00000576862 CDH9Q9ULB4 789 aa3.7□□□□□ -1.82
NUP88-213ENST00000576862 MRPS33Q9Y291 106 aaKnown RBP3.7□□□□□ -1.82
NUP88-213ENST00000576862 NTNG1Q9Y2I2 539 aa3.7□□□□□ -1.82
NUP88-213ENST00000576862 KLF2Q9Y5W3 355 aaPredicted RBP3.7□□□□□ -1.82
NUP88-213ENST00000576862 SSC5DA1L4H1 1573 aa3.7□□□□□ -1.82
NUP88-213ENST00000576862 LAMB1P07942 1786 aa3.7□□□□□ -1.82
NUP88-213ENST00000576862 CHD4Q14839 1912 aa3.7□□□□□ -1.82
NUP88-213ENST00000576862 NAV1Q8NEY1 1877 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 TRAV25A0A0B4J276 109 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 C1orf232A0A0U1RR37 186 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 A0A1B0GUA9 196 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 GOLGA8IPA6NC78 632 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 C12orf71A8MTZ7 269 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 A8MUI8 341 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 WASH3PC4AMC7 463 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 G3V3Y1 287 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 GOLGA8TH3BQL2 631 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 GOLGA8MH3BSY2 632 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 PDLIM1O00151 329 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 ZNF208O43345 1280 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 TRAPPC3O43617 180 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 SLC2A10O95528 541 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 MCF2P10911 925 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 CHI3L1P36222 383 aaPredicted RBP3.69□□□□□ -1.82
NUP88-213ENST00000576862 GRIA1P42261 906 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 CRATP43155 626 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 CBX5P45973 191 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 ALDH3B2P48448 385 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 SGSHP51688 502 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 CDH6P55285 790 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 RAG2P55895 527 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 ERVPABLB-1P60509 514 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 RPS15P62841 145 aaKnown RBP3.69□□□□□ -1.82
NUP88-213ENST00000576862 CBX1P83916 185 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 XIAPP98170 497 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 NCBP1Q09161 790 aaKnown RBP3.69□□□□□ -1.82
NUP88-213ENST00000576862 MERTKQ12866 999 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 ORC2Q13416 577 aaPredicted RBP3.69□□□□□ -1.82
NUP88-213ENST00000576862 ZIC1Q15915 447 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 ISXQ2M1V0 245 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 ZNF699Q32M78 642 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 HSP90AA4PQ58FG1 418 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 CMPK2Q5EBM0 449 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 THEM4Q5T1C6 240 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 PRAMEF5Q5TYX0 476 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 PRAMEF6Q5VXH4 476 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 PLCXD3Q63HM9 321 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 SPECC1LQ69YQ0 1117 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 TWF2Q6IBS0 349 aaKnown RBP3.69□□□□□ -1.82
NUP88-213ENST00000576862 LRRC8BQ6P9F7 803 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 USP50Q70EL3 339 aaPredicted RBP3.69□□□□□ -1.82
NUP88-213ENST00000576862 TRPM8Q7Z2W7 1104 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 APOBEC3FQ8IUX4 373 aaKnown RBP3.69□□□□□ -1.82
NUP88-213ENST00000576862 FBXO16Q8IX29 292 aaPredicted RBP3.69□□□□□ -1.82
NUP88-213ENST00000576862 LRRC34Q8IZ02 419 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 ST13P4Q8IZP2 240 aaPredicted RBP3.69□□□□□ -1.82
NUP88-213ENST00000576862 OR13F1Q8NGS4 319 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 PHOSPHO2Q8TCD6 241 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 GPX8Q8TED1 209 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 RAB1CQ92928 201 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 DLX4Q92988 240 aaPredicted RBP3.69□□□□□ -1.82
NUP88-213ENST00000576862 TMEM45BQ96B21 275 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 FAF2Q96CS3 445 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 PHYHIPLQ96FC7 376 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 CYYR1Q96J86 154 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 MBOAT7Q96N66 472 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 ALS2CR12Q96Q35 445 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 CITED1Q99966 193 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 APOOQ9BUR5 198 aa3.69□□□□□ -1.82
NUP88-213ENST00000576862 FTHL17Q9BXU8 183 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms