RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 CLEC4AQ9UMR7 237 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 BOLA1Q9Y3E2 137 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 TMEM72A0PK05 275 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 CDC14CA4D256 554 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 OR6C70A6NIJ9 312 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 DCTN6O00399 190 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 TO15178 435 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 HCRTR2O43614 444 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 NUDT21O43809 227 aaKnown RBP9.15□□□□□ -0.94
VPS53-220ENST00000576149 TSPAN2O60636 221 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 ZFPL1O95159 310 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 TACSTD2P09758 323 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 IL12BP29460 328 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 SRP9P49458 86 aaKnown RBP9.15□□□□□ -0.94
VPS53-220ENST00000576149 CSNK1EP49674 416 aaKnown RBP9.15□□□□□ -0.94
VPS53-220ENST00000576149 NTRK2Q16620 822 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 MESTQ5EB52 335 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 VWA2Q5GFL6 755 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 BAIAP2L2Q6UXY1 529 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 KRT74Q7RTS7 529 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 NANOGNBQ7Z5D8 188 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 ESX1Q8N693 406 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 ASCC1Q8N9N2 400 aaKnown RBP9.15□□□□□ -0.94
VPS53-220ENST00000576149 RGP1Q92546 391 aaPredicted RBP9.15□□□□□ -0.94
VPS53-220ENST00000576149 TSPAN32Q96QS1 320 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 GFI1Q99684 422 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 TTYH1Q9H313 450 aaPredicted RBP9.15□□□□□ -0.94
VPS53-220ENST00000576149 FKRPQ9H9S5 495 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 SRA1Q9HD15 236 aaKnown RBP9.15□□□□□ -0.94
VPS53-220ENST00000576149 PLSCR3Q9NRY6 295 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 ANKRD10Q9NXR5 420 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 SEMA5BQ9P283 1151 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 CAMK2AQ9UQM7 478 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 KLHDC2Q9Y2U9 406 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 PCDHGA9Q9Y5G4 932 aaKnown RBP9.15□□□□□ -0.94
VPS53-220ENST00000576149 A0A1W2PQD3 144 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 ACOD1A6NK06 481 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 FAM47E-STBD1D6RA91 191 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 UPK3AO75631 287 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 FOLR1P15328 257 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 FBLP22087 321 aaKnown RBP9.15□□□□□ -0.94
VPS53-220ENST00000576149 NR0B1P51843 470 aaKnown RBP9.15□□□□□ -0.94
VPS53-220ENST00000576149 RAC1P63000 192 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 NSDHLQ15738 373 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 SNAP47Q5SQN1 464 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 HLA-DQA1Q5Y7H0 255 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 MARCH3Q86UD3 253 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 CDC20BQ86Y33 519 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 OR6V1Q8N148 313 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 OR2T4Q8NH00 348 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 ZNF671Q8TAW3 534 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 LGALS14Q8TCE9 139 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 HSD17B8Q92506 261 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 DAZLQ92904 295 aaKnown RBP9.15□□□□□ -0.94
VPS53-220ENST00000576149 ORAI1Q96D31 301 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 MAP6Q96JE9 813 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 ADAD1Q96M93 576 aaKnown RBP9.15□□□□□ -0.94
VPS53-220ENST00000576149 ZFP3Q96NJ6 502 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 DERL3Q96Q80 235 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 GFM1Q96RP9 751 aaKnown RBP9.15□□□□□ -0.94
VPS53-220ENST00000576149 TMEM246Q9BRR3 403 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 FOXQ1Q9C009 403 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 NDEL1Q9GZM8 345 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 MCUBQ9NWR8 336 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 ING3Q9NXR8 418 aa9.15□□□□□ -0.94
VPS53-220ENST00000576149 MRM2Q9UI43 246 aaKnown RBP9.15□□□□□ -0.94
VPS53-220ENST00000576149 MRPS17Q9Y2R5 130 aaKnown RBP9.15□□□□□ -0.94
VPS53-220ENST00000576149 ARPC4-TTLL3A0A0A6YYG9 625 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 A0A1B0GTQ1 180 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 IFITM5A6NNB3 132 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 ALG1L2C9J202 215 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 PDCD5O14737 125 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 CTDSPLO15194 276 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 NDUFB5O43674 189 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 DUX1O43812 170 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 EIF4E2O60573 245 aaKnown RBP9.14□□□□□ -0.95
VPS53-220ENST00000576149 ABHD16AO95870 558 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 HIST1H2ABP04908 130 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 CD3GP09693 182 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 OR8G3PP0DMU2 310 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 CXCR1P25024 350 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 ERP29P30040 261 aaKnown RBP9.14□□□□□ -0.95
VPS53-220ENST00000576149 RAB25P57735 213 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 DGCR2P98153 550 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 EFR3AQ14156 821 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 TOMM34Q15785 309 aaPredicted RBP9.14□□□□□ -0.95
VPS53-220ENST00000576149 UBE2NLQ5JXB2 153 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 LIPNQ5VXI9 398 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 GPR139Q6DWJ6 353 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 ESPNLQ6ZVH7 1005 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 HIST3H2AQ7L7L0 130 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 FAM220AQ7Z4H9 259 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 BPHLQ86WA6 291 aaPredicted RBP9.14□□□□□ -0.95
VPS53-220ENST00000576149 TOMM5Q8N4H5 51 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 ADAMTS14Q8WXS8 1223 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 AKAP1Q92667 903 aaKnown RBP eCLIP9.14□□□□□ -0.95
VPS53-220ENST00000576149 HIST1H2ACQ93077 130 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 SLC41A2Q96JW4 573 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 WWTR1Q9GZV5 400 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 UBE2ZQ9H832 354 aaPredicted RBP9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms