RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 TNFRSF19Q9NS68 423 aa15.23■□□□□ 0.03
CLK3-227ENST00000570296 ST6GALNAC1Q9NSC7 600 aaPredicted RBP15.23■□□□□ 0.03
CLK3-227ENST00000570296 NECAP2Q9NVZ3 263 aa15.23■□□□□ 0.03
CLK3-227ENST00000570296 POMT1Q9Y6A1 747 aa15.23■□□□□ 0.03
CLK3-227ENST00000570296 SLC28A1O00337 649 aa15.22■□□□□ 0.03
CLK3-227ENST00000570296 PIP5K1CO60331 668 aa15.22■□□□□ 0.03
CLK3-227ENST00000570296 INHBAP08476 426 aa15.22■□□□□ 0.03
CLK3-227ENST00000570296 MAKP20794 623 aa15.22■□□□□ 0.03
CLK3-227ENST00000570296 MATN1P21941 496 aa15.22■□□□□ 0.03
CLK3-227ENST00000570296 CD80P33681 288 aa15.22■□□□□ 0.03
CLK3-227ENST00000570296 RPL3P39023 403 aaKnown RBP15.22■□□□□ 0.03
CLK3-227ENST00000570296 SLC6A9P48067 706 aa15.22■□□□□ 0.03
CLK3-227ENST00000570296 PTDSS1P48651 473 aaKnown RBP15.22■□□□□ 0.03
CLK3-227ENST00000570296 TSTQ16762 297 aaKnown RBP15.22■□□□□ 0.03
CLK3-227ENST00000570296 TYW3Q6IPR3 259 aaKnown RBP15.22■□□□□ 0.03
CLK3-227ENST00000570296 C11orf87Q6NUJ2 197 aa15.22■□□□□ 0.03
CLK3-227ENST00000570296 Q6YL49 198 aa15.22■□□□□ 0.03
CLK3-227ENST00000570296 SPICQ8N5J4 248 aa15.22■□□□□ 0.03
CLK3-227ENST00000570296 NATD1Q8N6N6 113 aa15.22■□□□□ 0.03
CLK3-227ENST00000570296 CPEB3Q8NE35 698 aaKnown RBP15.22■□□□□ 0.03
CLK3-227ENST00000570296 PIK3C3Q8NEB9 887 aa15.22■□□□□ 0.03
CLK3-227ENST00000570296 OR5AK3PQ8NH89 298 aa15.22■□□□□ 0.03
CLK3-227ENST00000570296 FBXO25Q8TCJ0 367 aa15.22■□□□□ 0.03
CLK3-227ENST00000570296 WWC2-AS2Q96NR7 200 aa15.22■□□□□ 0.03
CLK3-227ENST00000570296 EXD2Q9NVH0 621 aa15.22■□□□□ 0.03
CLK3-227ENST00000570296 OR5V1Q9UGF6 321 aa15.22■□□□□ 0.03
CLK3-227ENST00000570296 IL20RAQ9UHF4 553 aa15.22■□□□□ 0.03
CLK3-227ENST00000570296 TMED5Q9Y3A6 229 aa15.22■□□□□ 0.03
CLK3-227ENST00000570296 WDR45Q9Y484 360 aa15.22■□□□□ 0.03
CLK3-227ENST00000570296 TRAV40A0A0B4J280 105 aa15.21■□□□□ 0.03
CLK3-227ENST00000570296 FRS3O43559 492 aa15.21■□□□□ 0.03
CLK3-227ENST00000570296 UBOX5O94941 541 aa15.21■□□□□ 0.03
CLK3-227ENST00000570296 C6orf47O95873 294 aa15.21■□□□□ 0.03
CLK3-227ENST00000570296 LAMP1P11279 417 aa15.21■□□□□ 0.03
CLK3-227ENST00000570296 UQCRBP14927 111 aa15.21■□□□□ 0.03
CLK3-227ENST00000570296 ZNF43P17038 809 aa15.21■□□□□ 0.03
CLK3-227ENST00000570296 CXCR1P25024 350 aa15.21■□□□□ 0.03
CLK3-227ENST00000570296 PHBP35232 272 aa15.21■□□□□ 0.03
CLK3-227ENST00000570296 GIPRP48546 466 aa15.21■□□□□ 0.03
CLK3-227ENST00000570296 ZNF627Q7L945 461 aa15.21■□□□□ 0.03
CLK3-227ENST00000570296 OR7A2PQ8NGA2 310 aa15.21■□□□□ 0.03
CLK3-227ENST00000570296 ZNF519Q8TB69 540 aa15.21■□□□□ 0.03
CLK3-227ENST00000570296 CNOT9Q92600 299 aaKnown RBP15.21■□□□□ 0.03
CLK3-227ENST00000570296 DYRK2Q92630 601 aa15.21■□□□□ 0.03
CLK3-227ENST00000570296 PATZ1Q9HBE1 687 aaKnown RBP15.21■□□□□ 0.03
CLK3-227ENST00000570296 DYNC2H1Q8NCM8 4307 aaKnown RBP15.21■□□□□ 0.02
CLK3-227ENST00000570296 CLDN24A6NM45 220 aa15.2■□□□□ 0.02
CLK3-227ENST00000570296 A8MVM7 634 aa15.2■□□□□ 0.02
CLK3-227ENST00000570296 IGHV2-70P01814 119 aa15.2■□□□□ 0.02
CLK3-227ENST00000570296 RAB1AP62820 205 aa15.2■□□□□ 0.02
CLK3-227ENST00000570296 RPL38P63173 70 aaKnown RBP15.2■□□□□ 0.02
CLK3-227ENST00000570296 GSTA3Q16772 222 aa15.2■□□□□ 0.02
CLK3-227ENST00000570296 ZNF813Q6ZN06 617 aa15.2■□□□□ 0.02
CLK3-227ENST00000570296 KLHL36Q8N4N3 616 aa15.2■□□□□ 0.02
CLK3-227ENST00000570296 C11orf40Q8WZ69 217 aa15.2■□□□□ 0.02
CLK3-227ENST00000570296 NPHS2Q9NP85 383 aa15.2■□□□□ 0.02
CLK3-227ENST00000570296 ATAD3AQ9NVI7 634 aa15.2■□□□□ 0.02
CLK3-227ENST00000570296 AURKAIP1Q9NWT8 199 aaPredicted RBP15.2■□□□□ 0.02
CLK3-227ENST00000570296 ZNF224Q9NZL3 707 aa15.2■□□□□ 0.02
CLK3-227ENST00000570296 TMEM216Q9P0N5 145 aa15.2■□□□□ 0.02
CLK3-227ENST00000570296 NPTNQ9Y639 398 aa15.2■□□□□ 0.02
CLK3-227ENST00000570296 UBL3O95164 117 aa15.19■□□□□ 0.02
CLK3-227ENST00000570296 AGR2O95994 175 aa15.19■□□□□ 0.02
CLK3-227ENST00000570296 GSTA1P08263 222 aa15.19■□□□□ 0.02
CLK3-227ENST00000570296 UROSP10746 265 aa15.19■□□□□ 0.02
CLK3-227ENST00000570296 NEFHP12036 1026 aa15.19■□□□□ 0.02
CLK3-227ENST00000570296 BPIFB3P59826 476 aa15.19■□□□□ 0.02
CLK3-227ENST00000570296 NAA20P61599 178 aa15.19■□□□□ 0.02
CLK3-227ENST00000570296 TMEM155Q4W5P6 130 aa15.19■□□□□ 0.02
CLK3-227ENST00000570296 RFTN2Q52LD8 501 aaPredicted RBP15.19■□□□□ 0.02
CLK3-227ENST00000570296 C1orf140Q5VVS0 124 aa15.19■□□□□ 0.02
CLK3-227ENST00000570296 LRRN1Q6UXK5 716 aa15.19■□□□□ 0.02
CLK3-227ENST00000570296 FRRS1Q6ZNA5 592 aa15.19■□□□□ 0.02
CLK3-227ENST00000570296 CCNYL1Q8N7R7 359 aa15.19■□□□□ 0.02
CLK3-227ENST00000570296 BHLHE22Q8NFJ8 381 aaPredicted RBP15.19■□□□□ 0.02
CLK3-227ENST00000570296 OR10S1Q8NGN2 331 aa15.19■□□□□ 0.02
CLK3-227ENST00000570296 ZG16BQ96DA0 208 aa15.19■□□□□ 0.02
CLK3-227ENST00000570296 SLC47A1Q96FL8 570 aa15.19■□□□□ 0.02
CLK3-227ENST00000570296 FAM71F1Q96KD3 344 aaPredicted RBP15.19■□□□□ 0.02
CLK3-227ENST00000570296 OR2M2Q96R28 347 aa15.19■□□□□ 0.02
CLK3-227ENST00000570296 PRDM4Q9UKN5 801 aa15.19■□□□□ 0.02
CLK3-227ENST00000570296 GPR45Q9Y5Y3 372 aa15.19■□□□□ 0.02
CLK3-227ENST00000570296 TM9SF1O15321 606 aa15.18■□□□□ 0.02
CLK3-227ENST00000570296 AKAP8O43823 692 aaKnown RBP15.18■□□□□ 0.02
CLK3-227ENST00000570296 SERPINA5P05154 406 aa15.18■□□□□ 0.02
CLK3-227ENST00000570296 MELTFP08582 738 aa15.18■□□□□ 0.02
CLK3-227ENST00000570296 TFPTP0C1Z6 253 aa15.18■□□□□ 0.02
CLK3-227ENST00000570296 SBK2P0C263 348 aa15.18■□□□□ 0.02
CLK3-227ENST00000570296 FAM157BP0CG42 384 aa15.18■□□□□ 0.02
CLK3-227ENST00000570296 OR8G3PP0DMU2 310 aa15.18■□□□□ 0.02
CLK3-227ENST00000570296 SOAT1P35610 550 aa15.18■□□□□ 0.02
CLK3-227ENST00000570296 ZNF81P51508 661 aa15.18■□□□□ 0.02
CLK3-227ENST00000570296 SEC61A1P61619 476 aaKnown RBP15.18■□□□□ 0.02
CLK3-227ENST00000570296 CAMK2DQ13557 499 aa15.18■□□□□ 0.02
CLK3-227ENST00000570296 RAB39AQ14964 217 aa15.18■□□□□ 0.02
CLK3-227ENST00000570296 ESCO2Q56NI9 601 aa15.18■□□□□ 0.02
CLK3-227ENST00000570296 ATAD3BQ5T9A4 648 aa15.18■□□□□ 0.02
CLK3-227ENST00000570296 LIPMQ5VYY2 423 aa15.18■□□□□ 0.02
CLK3-227ENST00000570296 BTNL3Q6UXE8 466 aa15.18■□□□□ 0.02
CLK3-227ENST00000570296 C6orf120Q7Z4R8 191 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms