RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 TRIM64A6NGJ6 449 aa17.71■□□□□ 0.43
CLK3-225ENST00000569063 TRIM64BA6NI03 449 aa17.71■□□□□ 0.43
CLK3-225ENST00000569063 CH25HO95992 272 aa17.71■□□□□ 0.43
CLK3-225ENST00000569063 AHCYP23526 432 aa17.71■□□□□ 0.43
CLK3-225ENST00000569063 ARF1P84077 181 aaKnown RBP17.71■□□□□ 0.43
CLK3-225ENST00000569063 ZP4Q12836 540 aa17.71■□□□□ 0.43
CLK3-225ENST00000569063 C3orf36Q3SXR2 165 aa17.71■□□□□ 0.43
CLK3-225ENST00000569063 ZNF544Q6NX49 715 aa17.71■□□□□ 0.43
CLK3-225ENST00000569063 FAM169BQ8N8A8 192 aa17.71■□□□□ 0.43
CLK3-225ENST00000569063 TXNDC15Q96J42 360 aa17.71■□□□□ 0.43
CLK3-225ENST00000569063 SMR3AQ99954 134 aa17.71■□□□□ 0.43
CLK3-225ENST00000569063 EMC6Q9BV81 110 aa17.71■□□□□ 0.43
CLK3-225ENST00000569063 NANSQ9NR45 359 aa17.71■□□□□ 0.43
CLK3-225ENST00000569063 CMTM6Q9NX76 183 aa17.71■□□□□ 0.43
CLK3-225ENST00000569063 CRNNQ9UBG3 495 aaPredicted RBP17.71■□□□□ 0.43
CLK3-225ENST00000569063 ACANP16112 2415 aa17.7■□□□□ 0.42
CLK3-225ENST00000569063 IGHV1-18A0A0C4DH31 117 aa17.7■□□□□ 0.42
CLK3-225ENST00000569063 SLC35F4A4IF30 521 aa17.7■□□□□ 0.42
CLK3-225ENST00000569063 FAM171A2A8MVW0 826 aa17.7■□□□□ 0.42
CLK3-225ENST00000569063 OR5F1O95221 314 aa17.7■□□□□ 0.42
CLK3-225ENST00000569063 ADORA3P0DMS8 318 aa17.7■□□□□ 0.42
CLK3-225ENST00000569063 TNFRSF1BP20333 461 aa17.7■□□□□ 0.42
CLK3-225ENST00000569063 CEACAM16Q2WEN9 425 aa17.7■□□□□ 0.42
CLK3-225ENST00000569063 CYBRD1Q53TN4 286 aa17.7■□□□□ 0.42
CLK3-225ENST00000569063 PHYHD1Q5SRE7 291 aa17.7■□□□□ 0.42
CLK3-225ENST00000569063 C11orf71Q6IPW1 123 aa17.7■□□□□ 0.42
CLK3-225ENST00000569063 SPATA21Q7Z572 469 aa17.7■□□□□ 0.42
CLK3-225ENST00000569063 SLC15A3Q8IY34 581 aa17.7■□□□□ 0.42
CLK3-225ENST00000569063 ZNF837Q96EG3 531 aaPredicted RBP17.7■□□□□ 0.42
CLK3-225ENST00000569063 SLC38A2Q96QD8 506 aa17.7■□□□□ 0.42
CLK3-225ENST00000569063 HOPXQ9BPY8 73 aaPredicted RBP17.7■□□□□ 0.42
CLK3-225ENST00000569063 EFCAB1Q9HAE3 211 aa17.7■□□□□ 0.42
CLK3-225ENST00000569063 MEPEQ9NQ76 525 aaPredicted RBP17.7■□□□□ 0.42
CLK3-225ENST00000569063 CBLN4Q9NTU7 201 aa17.7■□□□□ 0.42
CLK3-225ENST00000569063 MED29Q9NX70 200 aa17.7■□□□□ 0.42
CLK3-225ENST00000569063 TAS2R5Q9NYW4 299 aa17.7■□□□□ 0.42
CLK3-225ENST00000569063 ZNF229Q9UJW7 825 aa17.7■□□□□ 0.42
CLK3-225ENST00000569063 ATP23Q9Y6H3 246 aa17.7■□□□□ 0.42
CLK3-225ENST00000569063 ZNF726A6NNF4 738 aa17.69■□□□□ 0.42
CLK3-225ENST00000569063 ZNF99A8MXY4 864 aaPredicted RBP17.69■□□□□ 0.42
CLK3-225ENST00000569063 M0R3G1 203 aa17.69■□□□□ 0.42
CLK3-225ENST00000569063 OR6A2O95222 327 aa17.69■□□□□ 0.42
CLK3-225ENST00000569063 IGLV1-44P01699 117 aa17.69■□□□□ 0.42
CLK3-225ENST00000569063 ASAH2BP0C7U1 165 aa17.69■□□□□ 0.42
CLK3-225ENST00000569063 RBM34P42696 430 aaKnown RBP17.69■□□□□ 0.42
CLK3-225ENST00000569063 OR1E2P47887 323 aa17.69■□□□□ 0.42
CLK3-225ENST00000569063 FABP6P51161 128 aa17.69■□□□□ 0.42
CLK3-225ENST00000569063 TAS2R41P59536 307 aa17.69■□□□□ 0.42
CLK3-225ENST00000569063 SELENOWP63302 87 aa17.69■□□□□ 0.42
CLK3-225ENST00000569063 LRRC23Q53EV4 343 aaPredicted RBP17.69■□□□□ 0.42
CLK3-225ENST00000569063 CARD17Q5XLA6 110 aa17.69■□□□□ 0.42
CLK3-225ENST00000569063 C8orf82Q6P1X6 216 aaPredicted RBP17.69■□□□□ 0.42
CLK3-225ENST00000569063 TREML1Q86YW5 311 aa17.69■□□□□ 0.42
CLK3-225ENST00000569063 FBXL14Q8N1E6 418 aa17.69■□□□□ 0.42
CLK3-225ENST00000569063 MUC15Q8N387 334 aa17.69■□□□□ 0.42
CLK3-225ENST00000569063 LRRC17Q8N6Y2 441 aa17.69■□□□□ 0.42
CLK3-225ENST00000569063 ELAC2Q9BQ52 826 aaKnown RBP17.69■□□□□ 0.42
CLK3-225ENST00000569063 KATNB1Q9BVA0 655 aa17.69■□□□□ 0.42
CLK3-225ENST00000569063 RIMS3Q9UJD0 308 aa17.69■□□□□ 0.42
CLK3-225ENST00000569063 MOKQ9UQ07 419 aa17.69■□□□□ 0.42
CLK3-225ENST00000569063 ATP6V1G2-DDX39BF2Z307 99 aa17.68■□□□□ 0.42
CLK3-225ENST00000569063 KPNA4O00629 521 aaPredicted RBP17.68■□□□□ 0.42
CLK3-225ENST00000569063 IGF2P01344 180 aa17.68■□□□□ 0.42
CLK3-225ENST00000569063 IGHV4-39P01824 125 aa17.68■□□□□ 0.42
CLK3-225ENST00000569063 MT-ND1P03886 318 aa17.68■□□□□ 0.42
CLK3-225ENST00000569063 THRBP10828 461 aa17.68■□□□□ 0.42
CLK3-225ENST00000569063 CLEC12BQ2HXU8 276 aa17.68■□□□□ 0.42
CLK3-225ENST00000569063 HACD2Q6Y1H2 254 aa17.68■□□□□ 0.42
CLK3-225ENST00000569063 DEF8Q6ZN54 512 aa17.68■□□□□ 0.42
CLK3-225ENST00000569063 ZNF627Q7L945 461 aa17.68■□□□□ 0.42
CLK3-225ENST00000569063 WDFY1Q8IWB7 410 aa17.68■□□□□ 0.42
CLK3-225ENST00000569063 CCDC36Q8IYA8 594 aa17.68■□□□□ 0.42
CLK3-225ENST00000569063 ADAD1Q96M93 576 aaKnown RBP17.68■□□□□ 0.42
CLK3-225ENST00000569063 MYLK2Q9H1R3 596 aa17.68■□□□□ 0.42
CLK3-225ENST00000569063 B3GAT2Q9NPZ5 323 aa17.68■□□□□ 0.42
CLK3-225ENST00000569063 USF3Q68DE3 2245 aa17.68■□□□□ 0.42
CLK3-225ENST00000569063 MTORP42345 2549 aa17.67■□□□□ 0.42
CLK3-225ENST00000569063 C11orf98E9PRG8 122 aa17.67■□□□□ 0.42
CLK3-225ENST00000569063 SHOX2O60902 331 aaPredicted RBP17.67■□□□□ 0.42
CLK3-225ENST00000569063 IGKV3-15P01624 115 aa17.67■□□□□ 0.42
CLK3-225ENST00000569063 HIST1H2ABP04908 130 aa17.67■□□□□ 0.42
CLK3-225ENST00000569063 IFNGR1P15260 489 aa17.67■□□□□ 0.42
CLK3-225ENST00000569063 CBR1P16152 277 aa17.67■□□□□ 0.42
CLK3-225ENST00000569063 APOBEC3AP31941 199 aaPredicted RBP17.67■□□□□ 0.42
CLK3-225ENST00000569063 SEC24CP53992 1094 aa17.67■□□□□ 0.42
CLK3-225ENST00000569063 TUBA1BP68363 451 aa17.67■□□□□ 0.42
CLK3-225ENST00000569063 TUBA4AP68366 448 aa17.67■□□□□ 0.42
CLK3-225ENST00000569063 LIPEQ05469 1076 aa17.67■□□□□ 0.42
CLK3-225ENST00000569063 TNK1Q13470 666 aa17.67■□□□□ 0.42
CLK3-225ENST00000569063 PIN1Q13526 163 aaPredicted RBP17.67■□□□□ 0.42
CLK3-225ENST00000569063 CAMK2DQ13557 499 aa17.67■□□□□ 0.42
CLK3-225ENST00000569063 CLEC9AQ6UXN8 241 aa17.67■□□□□ 0.42
CLK3-225ENST00000569063 TUBA1AQ71U36 451 aa17.67■□□□□ 0.42
CLK3-225ENST00000569063 SLC35D2Q76EJ3 337 aa17.67■□□□□ 0.42
CLK3-225ENST00000569063 HIST3H2AQ7L7L0 130 aa17.67■□□□□ 0.42
CLK3-225ENST00000569063 SLC46A3Q7Z3Q1 461 aa17.67■□□□□ 0.42
CLK3-225ENST00000569063 NKAIN4Q8IVV8 208 aa17.67■□□□□ 0.42
CLK3-225ENST00000569063 OR6X1Q8NH79 312 aa17.67■□□□□ 0.42
CLK3-225ENST00000569063 LZICQ8WZA0 190 aa17.67■□□□□ 0.42
CLK3-225ENST00000569063 HIST1H2ACQ93077 130 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms