RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 ALPK2Q86TB3 2170 aa11.44□□□□□ -0.58
CLK3-224ENST00000568605 CREBBPQ92793 2442 aa11.44□□□□□ -0.58
CLK3-224ENST00000568605 CADP27708 2225 aa11.43□□□□□ -0.58
CLK3-224ENST00000568605 A0A1W2PRG6 482 aa11.43□□□□□ -0.58
CLK3-224ENST00000568605 MCIDASD6RGH6 385 aa11.43□□□□□ -0.58
CLK3-224ENST00000568605 BLOC1S5-TXNDC5H3BN57 136 aa11.43□□□□□ -0.58
CLK3-224ENST00000568605 hCG_2039718K7EN88 272 aa11.43□□□□□ -0.58
CLK3-224ENST00000568605 GYG2O15488 501 aa11.43□□□□□ -0.58
CLK3-224ENST00000568605 UBOX5O94941 541 aa11.43□□□□□ -0.58
CLK3-224ENST00000568605 WNT11O96014 354 aa11.43□□□□□ -0.58
CLK3-224ENST00000568605 HPRP00739 348 aa11.43□□□□□ -0.58
CLK3-224ENST00000568605 FABP3P05413 133 aa11.43□□□□□ -0.58
CLK3-224ENST00000568605 NR2C1P13056 603 aa11.43□□□□□ -0.58
CLK3-224ENST00000568605 FUT1P19526 365 aa11.43□□□□□ -0.58
CLK3-224ENST00000568605 MSX2P35548 267 aaPredicted RBP11.43□□□□□ -0.58
CLK3-224ENST00000568605 SLC9A3P48764 834 aa11.43□□□□□ -0.58
CLK3-224ENST00000568605 DAP3P51398 398 aaKnown RBP11.43□□□□□ -0.58
CLK3-224ENST00000568605 SMIM11AP58511 58 aa11.43□□□□□ -0.58
CLK3-224ENST00000568605 GABRA6Q16445 453 aa11.43□□□□□ -0.58
CLK3-224ENST00000568605 C9orf135Q5VTT2 229 aa11.43□□□□□ -0.58
CLK3-224ENST00000568605 LCN8Q6JVE9 175 aa11.43□□□□□ -0.58
CLK3-224ENST00000568605 PAMR1Q6UXH9 720 aa11.43□□□□□ -0.58
CLK3-224ENST00000568605 SLC35D2Q76EJ3 337 aa11.43□□□□□ -0.58
CLK3-224ENST00000568605 DHFR2Q86XF0 187 aa11.43□□□□□ -0.58
CLK3-224ENST00000568605 NRMQ8IXM6 262 aa11.43□□□□□ -0.58
CLK3-224ENST00000568605 LIPHQ8WWY8 451 aa11.43□□□□□ -0.58
CLK3-224ENST00000568605 NINJ1Q92982 152 aa11.43□□□□□ -0.58
CLK3-224ENST00000568605 CCDC124Q96CT7 223 aaKnown RBP11.43□□□□□ -0.58
CLK3-224ENST00000568605 ASB9Q96DX5 294 aa11.43□□□□□ -0.58
CLK3-224ENST00000568605 PLPPR2Q96GM1 343 aa11.43□□□□□ -0.58
CLK3-224ENST00000568605 LRR1Q96L50 414 aa11.43□□□□□ -0.58
CLK3-224ENST00000568605 LRGUKQ96M69 825 aa11.43□□□□□ -0.58
CLK3-224ENST00000568605 OR2M2Q96R28 347 aa11.43□□□□□ -0.58
CLK3-224ENST00000568605 OBP2BQ9NPH6 170 aa11.43□□□□□ -0.58
CLK3-224ENST00000568605 MAN2C1Q9NTJ4 1040 aa11.43□□□□□ -0.58
CLK3-224ENST00000568605 C20orf141Q9NUB4 165 aa11.43□□□□□ -0.58
CLK3-224ENST00000568605 MYO9AB2RTY4 2548 aa11.43□□□□□ -0.58
CLK3-224ENST00000568605 A0A1W2PRQ8 180 aa11.42□□□□□ -0.58
CLK3-224ENST00000568605 SLC35F4A4IF30 521 aa11.42□□□□□ -0.58
CLK3-224ENST00000568605 PIP5K1CO60331 668 aa11.42□□□□□ -0.58
CLK3-224ENST00000568605 ENTPD5O75356 428 aa11.42□□□□□ -0.58
CLK3-224ENST00000568605 PDE5AO76074 875 aa11.42□□□□□ -0.58
CLK3-224ENST00000568605 PRSS23O95084 383 aa11.42□□□□□ -0.58
CLK3-224ENST00000568605 CD3EP07766 207 aa11.42□□□□□ -0.58
CLK3-224ENST00000568605 T-ENOLP0DO92 83 aa11.42□□□□□ -0.58
CLK3-224ENST00000568605 IFNGR1P15260 489 aa11.42□□□□□ -0.58
CLK3-224ENST00000568605 CDH2P19022 906 aaPredicted RBP11.42□□□□□ -0.58
CLK3-224ENST00000568605 CSNK1A1P48729 337 aa11.42□□□□□ -0.58
CLK3-224ENST00000568605 RASSF2P50749 326 aa11.42□□□□□ -0.58
CLK3-224ENST00000568605 PRPS1P60891 318 aa11.42□□□□□ -0.58
CLK3-224ENST00000568605 UBE2NP61088 152 aaKnown RBP11.42□□□□□ -0.58
CLK3-224ENST00000568605 VLDLRP98155 873 aa11.42□□□□□ -0.58
CLK3-224ENST00000568605 SPIBQ01892 262 aa11.42□□□□□ -0.58
CLK3-224ENST00000568605 ROR2Q01974 943 aaKnown RBP11.42□□□□□ -0.58
CLK3-224ENST00000568605 PRKCDQ05655 676 aa11.42□□□□□ -0.58
CLK3-224ENST00000568605 RPL18Q07020 188 aaKnown RBP11.42□□□□□ -0.58
CLK3-224ENST00000568605 DGCR6Q14129 220 aa11.42□□□□□ -0.58
CLK3-224ENST00000568605 TRIM25Q14258 630 aaKnown RBP11.42□□□□□ -0.58
CLK3-224ENST00000568605 CYP2R1Q6VVX0 501 aa11.42□□□□□ -0.58
CLK3-224ENST00000568605 MBOAT2Q6ZWT7 520 aa11.42□□□□□ -0.58
CLK3-224ENST00000568605 TMEM123Q8N131 208 aa11.42□□□□□ -0.58
CLK3-224ENST00000568605 LRRC17Q8N6Y2 441 aa11.42□□□□□ -0.58
CLK3-224ENST00000568605 FAM86B1Q8N7N1 296 aa11.42□□□□□ -0.58
CLK3-224ENST00000568605 OR6N1Q8NGY5 312 aa11.42□□□□□ -0.58
CLK3-224ENST00000568605 OR52N5Q8NH56 324 aa11.42□□□□□ -0.58
CLK3-224ENST00000568605 MUS81Q96NY9 551 aa11.42□□□□□ -0.58
CLK3-224ENST00000568605 ZNF347Q96SE7 839 aa11.42□□□□□ -0.58
CLK3-224ENST00000568605 PIP5K1AQ99755 562 aa11.42□□□□□ -0.58
CLK3-224ENST00000568605 ULBP2Q9BZM5 246 aa11.42□□□□□ -0.58
CLK3-224ENST00000568605 NMNAT1Q9HAN9 279 aaPredicted RBP11.42□□□□□ -0.58
CLK3-224ENST00000568605 INIPQ9NRY2 104 aa11.42□□□□□ -0.58
CLK3-224ENST00000568605 MED29Q9NX70 200 aa11.42□□□□□ -0.58
CLK3-224ENST00000568605 TAS2R1Q9NYW7 299 aa11.42□□□□□ -0.58
CLK3-224ENST00000568605 NDUFAF4Q9P032 175 aa11.42□□□□□ -0.58
CLK3-224ENST00000568605 RNF115Q9Y4L5 304 aa11.42□□□□□ -0.58
CLK3-224ENST00000568605 PDZD2O15018 2839 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 ROS1P08922 2347 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 CCDC168Q8NDH2 2452 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 NPIPB13A6NJU9 1138 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 EFCAB9A8MZ26 197 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 NPIPB4C9JG80 1138 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 RPL36A-HNRNPH2H7BZ11 118 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 M0R3G1 203 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 FFAR1O14842 300 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 CLOCKO15516 846 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 SIAH2O43255 324 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 UPK3AO75631 287 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 GADD45GO95257 159 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 BCL10O95999 233 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 IGHG1P01857 330 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 RAF1P04049 648 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 SEMG1P04279 462 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 HLA-DOBP13765 273 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 HOXB6P17509 224 aaKnown RBP11.41□□□□□ -0.58
CLK3-224ENST00000568605 ATP6V1B2P21281 511 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 DNASE1P24855 282 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 BIDP55957 195 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 CAMK2DQ13557 499 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 KEAP1Q14145 624 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 ALG10Q5BKT4 473 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms