RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 OR11A1Q9GZK7 315 aa18.35■□□□□ 0.53
CLN3-230ENST00000568076 ZCCHC4Q9H5U6 513 aa18.35■□□□□ 0.53
CLN3-230ENST00000568076 APMAPQ9HDC9 416 aa18.35■□□□□ 0.53
CLN3-230ENST00000568076 MRM2Q9UI43 246 aaKnown RBP18.35■□□□□ 0.53
CLN3-230ENST00000568076 A0A0B4J203 849 aa18.34■□□□□ 0.53
CLN3-230ENST00000568076 ARHGEF9O43307 516 aa18.34■□□□□ 0.53
CLN3-230ENST00000568076 MT-ATP6P00846 226 aa18.34■□□□□ 0.53
CLN3-230ENST00000568076 OR8G3PP0DMU2 310 aa18.34■□□□□ 0.53
CLN3-230ENST00000568076 ATF1P18846 271 aa18.34■□□□□ 0.53
CLN3-230ENST00000568076 NPR2P20594 1047 aa18.34■□□□□ 0.53
CLN3-230ENST00000568076 FAM69AQ5T7M9 428 aa18.34■□□□□ 0.53
CLN3-230ENST00000568076 OVCH1Q7RTY7 1134 aa18.34■□□□□ 0.53
CLN3-230ENST00000568076 MAMDC2Q7Z304 686 aaPredicted RBP18.34■□□□□ 0.53
CLN3-230ENST00000568076 GRINAQ7Z429 371 aa18.34■□□□□ 0.53
CLN3-230ENST00000568076 PM20D2Q8IYS1 436 aa18.34■□□□□ 0.53
CLN3-230ENST00000568076 OR2I1PQ8NGU4 316 aa18.34■□□□□ 0.53
CLN3-230ENST00000568076 OR5H6Q8NGV6 325 aa18.34■□□□□ 0.53
CLN3-230ENST00000568076 OR2T4Q8NH00 348 aa18.34■□□□□ 0.53
CLN3-230ENST00000568076 ORAI1Q96D31 301 aa18.34■□□□□ 0.53
CLN3-230ENST00000568076 NDEL1Q9GZM8 345 aa18.34■□□□□ 0.53
CLN3-230ENST00000568076 WDR76Q9H967 626 aa18.34■□□□□ 0.53
CLN3-230ENST00000568076 PPIEQ9UNP9 301 aaKnown RBP18.34■□□□□ 0.53
CLN3-230ENST00000568076 ASCC3Q8N3C0 2202 aaKnown RBP18.34■□□□□ 0.53
CLN3-230ENST00000568076 MEIOCA2RUB1 952 aa18.33■□□□□ 0.53
CLN3-230ENST00000568076 NOTOA8MTQ0 251 aa18.33■□□□□ 0.53
CLN3-230ENST00000568076 A8MVM7 634 aa18.33■□□□□ 0.53
CLN3-230ENST00000568076 PIN1P1O15428 100 aa18.33■□□□□ 0.53
CLN3-230ENST00000568076 GPRIN2O60269 458 aa18.33■□□□□ 0.53
CLN3-230ENST00000568076 UPK3AO75631 287 aa18.33■□□□□ 0.53
CLN3-230ENST00000568076 ARL6IP5O75915 188 aa18.33■□□□□ 0.53
CLN3-230ENST00000568076 AKR7A3O95154 331 aa18.33■□□□□ 0.53
CLN3-230ENST00000568076 ZFPL1O95159 310 aa18.33■□□□□ 0.53
CLN3-230ENST00000568076 ABHD16AO95870 558 aa18.33■□□□□ 0.53
CLN3-230ENST00000568076 PLGP00747 810 aaPredicted RBP18.33■□□□□ 0.53
CLN3-230ENST00000568076 TFPIP10646 304 aa18.33■□□□□ 0.53
CLN3-230ENST00000568076 EPXP11678 715 aa18.33■□□□□ 0.53
CLN3-230ENST00000568076 PSKH1P11801 424 aa18.33■□□□□ 0.53
CLN3-230ENST00000568076 RPS27P42677 84 aaKnown RBP18.33■□□□□ 0.53
CLN3-230ENST00000568076 MAGEB1P43366 347 aa18.33■□□□□ 0.53
CLN3-230ENST00000568076 MAP2K3P46734 347 aa18.33■□□□□ 0.53
CLN3-230ENST00000568076 SGCBQ16585 318 aa18.33■□□□□ 0.53
CLN3-230ENST00000568076 C1orf140Q5VVS0 124 aa18.33■□□□□ 0.53
CLN3-230ENST00000568076 ZNF544Q6NX49 715 aa18.33■□□□□ 0.53
CLN3-230ENST00000568076 PAPD4Q6PIY7 484 aaKnown RBP18.33■□□□□ 0.53
CLN3-230ENST00000568076 EID2Q8N6I1 236 aa18.33■□□□□ 0.53
CLN3-230ENST00000568076 ADAD1Q96M93 576 aaKnown RBP18.33■□□□□ 0.53
CLN3-230ENST00000568076 SUSD2Q9UGT4 822 aa18.33■□□□□ 0.53
CLN3-230ENST00000568076 VSTM2BA6NLU5 285 aa18.33■□□□□ 0.52
CLN3-230ENST00000568076 RENP00797 406 aa18.33■□□□□ 0.52
CLN3-230ENST00000568076 FAM157BP0CG42 384 aa18.33■□□□□ 0.52
CLN3-230ENST00000568076 PRKCAP17252 672 aa18.33■□□□□ 0.52
CLN3-230ENST00000568076 SLC26A5P58743 744 aa18.33■□□□□ 0.52
CLN3-230ENST00000568076 GLCCI1Q86VQ1 547 aa18.33■□□□□ 0.52
CLN3-230ENST00000568076 NUBPLQ8TB37 319 aa18.33■□□□□ 0.52
CLN3-230ENST00000568076 HGDQ93099 445 aa18.33■□□□□ 0.52
CLN3-230ENST00000568076 MAP6Q96JE9 813 aa18.33■□□□□ 0.52
CLN3-230ENST00000568076 GAREM1Q9H706 876 aa18.33■□□□□ 0.52
CLN3-230ENST00000568076 GALNT9Q9HCQ5 603 aa18.33■□□□□ 0.52
CLN3-230ENST00000568076 NOX4Q9NPH5 578 aa18.33■□□□□ 0.52
CLN3-230ENST00000568076 A0A0B4J293 547 aa18.32■□□□□ 0.52
CLN3-230ENST00000568076 FLRT2O43155 660 aa18.32■□□□□ 0.52
CLN3-230ENST00000568076 CCNKO75909 580 aa18.32■□□□□ 0.52
CLN3-230ENST00000568076 DXOO77932 396 aaKnown RBP18.32■□□□□ 0.52
CLN3-230ENST00000568076 RPP14O95059 124 aaKnown RBP18.32■□□□□ 0.52
CLN3-230ENST00000568076 SNRPBP14678 240 aaKnown RBP18.32■□□□□ 0.52
CLN3-230ENST00000568076 RBMS1P29558 406 aaKnown RBP18.32■□□□□ 0.52
CLN3-230ENST00000568076 EMP2P54851 167 aa18.32■□□□□ 0.52
CLN3-230ENST00000568076 EFR3AQ14156 821 aa18.32■□□□□ 0.52
CLN3-230ENST00000568076 SLC6A19Q695T7 634 aa18.32■□□□□ 0.52
CLN3-230ENST00000568076 SCAIQ8N9R8 606 aa18.32■□□□□ 0.52
CLN3-230ENST00000568076 ZNF519Q8TB69 540 aa18.32■□□□□ 0.52
CLN3-230ENST00000568076 SPSB2Q99619 263 aa18.32■□□□□ 0.52
CLN3-230ENST00000568076 MFRPQ9BY79 579 aa18.32■□□□□ 0.52
CLN3-230ENST00000568076 RBFOX1Q9NWB1 397 aaKnown RBP18.32■□□□□ 0.52
CLN3-230ENST00000568076 ZNF281Q9Y2X9 895 aa18.32■□□□□ 0.52
CLN3-230ENST00000568076 AK6Q9Y3D8 172 aaKnown RBP18.32■□□□□ 0.52
CLN3-230ENST00000568076 TRBV11-1A0A0K0K1C0 115 aa18.31■□□□□ 0.52
CLN3-230ENST00000568076 ACOD1A6NK06 481 aa18.31■□□□□ 0.52
CLN3-230ENST00000568076 LANCL1O43813 399 aa18.31■□□□□ 0.52
CLN3-230ENST00000568076 AHCYP23526 432 aa18.31■□□□□ 0.52
CLN3-230ENST00000568076 ACKR1Q16570 336 aa18.31■□□□□ 0.52
CLN3-230ENST00000568076 HSD17B12Q53GQ0 312 aa18.31■□□□□ 0.52
CLN3-230ENST00000568076 LIPNQ5VXI9 398 aa18.31■□□□□ 0.52
CLN3-230ENST00000568076 OR6N2Q8NGY6 317 aa18.31■□□□□ 0.52
CLN3-230ENST00000568076 OR6F1Q8NGZ6 308 aa18.31■□□□□ 0.52
CLN3-230ENST00000568076 METTL21AQ8WXB1 218 aa18.31■□□□□ 0.52
CLN3-230ENST00000568076 ZC3HAV1LQ96H79 300 aaKnown RBP18.31■□□□□ 0.52
CLN3-230ENST00000568076 GFI1Q99684 422 aa18.31■□□□□ 0.52
CLN3-230ENST00000568076 AKIRIN1Q9H9L7 192 aaPredicted RBP18.31■□□□□ 0.52
CLN3-230ENST00000568076 PRMT8Q9NR22 394 aaPredicted RBP18.31■□□□□ 0.52
CLN3-230ENST00000568076 OCIAD1Q9NX40 245 aa18.31■□□□□ 0.52
CLN3-230ENST00000568076 HRH3Q9Y5N1 445 aa18.31■□□□□ 0.52
CLN3-230ENST00000568076 VPS13AQ96RL7 3174 aa18.31■□□□□ 0.52
CLN3-230ENST00000568076 LYRM1O43325 122 aa18.31■□□□□ 0.52
CLN3-230ENST00000568076 FZD7O75084 574 aa18.31■□□□□ 0.52
CLN3-230ENST00000568076 ONECUT2O95948 504 aa18.31■□□□□ 0.52
CLN3-230ENST00000568076 TALDO1P37837 337 aa18.31■□□□□ 0.52
CLN3-230ENST00000568076 TMED10P49755 219 aaKnown RBP18.31■□□□□ 0.52
CLN3-230ENST00000568076 KCNJ8Q15842 424 aa18.31■□□□□ 0.52
CLN3-230ENST00000568076 DPY19L4Q7Z388 723 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms