RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 DNAJA1P31689 397 aaKnown RBP8.09□□□□□ -1.11
VPS35-206ENST00000565228 GPR4P46093 362 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 IST1P53990 364 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 POU3F1Q03052 451 aaPredicted RBP8.09□□□□□ -1.11
VPS35-206ENST00000565228 PUDPQ08623 228 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 ST3GAL3Q11203 375 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 ITGADQ13349 1161 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 PMS2P3Q13401 168 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 CAMK2DQ13557 499 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 TRAM2Q15035 370 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 CARD17Q5XLA6 110 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 C5orf46Q6UWT4 87 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 THSD4Q6ZMP0 1018 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 MBOAT2Q6ZWT7 520 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 ASRGL1Q7L266 308 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 BHLHA15Q7RTS1 189 aaPredicted RBP8.09□□□□□ -1.11
VPS35-206ENST00000565228 ZER1Q7Z7L7 766 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 MYPOPQ86VE0 399 aaPredicted RBP8.09□□□□□ -1.11
VPS35-206ENST00000565228 C20orf196Q8IYI0 205 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 ZNF100Q8IYN0 542 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 C10orf53Q8N6V4 93 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 SCAIQ8N9R8 606 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 FGFBP3Q8TAT2 258 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 FAM222BQ8WU58 562 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 ACOT11Q8WXI4 607 aaPredicted RBP8.09□□□□□ -1.11
VPS35-206ENST00000565228 LZICQ8WZA0 190 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 NEUROG1Q92886 237 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 NMD3Q96D46 503 aaKnown RBP8.09□□□□□ -1.11
VPS35-206ENST00000565228 ASB9Q96DX5 294 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 FAM46AQ96IP4 442 aaKnown RBP8.09□□□□□ -1.11
VPS35-206ENST00000565228 LURAP1Q96LR2 239 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 DACH2Q96NX9 599 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 MUS81Q96NY9 551 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 PIP5K1AQ99755 562 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 FNDC11Q9BVV2 318 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 PLEKHF2Q9H8W4 249 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 SEC61A2Q9H9S3 476 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 NOX3Q9HBY0 568 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 IL1RAPQ9NPH3 570 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 NANSQ9NR45 359 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 RASSF1Q9NS23 344 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 ZNF224Q9NZL3 707 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 EMC3Q9P0I2 261 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 ZNF229Q9UJW7 825 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 SAMD4AQ9UPU9 718 aaKnown RBP8.09□□□□□ -1.11
VPS35-206ENST00000565228 POMPQ9Y244 141 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 GPR52Q9Y2T5 361 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 SLC25A15Q9Y619 301 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 PRRC2AP48634 2157 aaKnown RBP8.09□□□□□ -1.11
VPS35-206ENST00000565228 A0A1W2PRQ8 180 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 SH3PXD2BA1X283 911 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 DPRXA6NFQ7 191 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 MCIDASD6RGH6 385 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 GPR171O14626 319 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 GYG2O15488 501 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 DNAJC8O75937 253 aaPredicted RBP8.08□□□□□ -1.12
VPS35-206ENST00000565228 MT-ATP6P00846 226 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 IGF2P01344 180 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 TP53P04637 393 aaPredicted RBP8.08□□□□□ -1.12
VPS35-206ENST00000565228 H1F0P07305 194 aaKnown RBP8.08□□□□□ -1.12
VPS35-206ENST00000565228 IGFBP1P08833 259 aaPredicted RBP8.08□□□□□ -1.12
VPS35-206ENST00000565228 NQO1P15559 274 aaKnown RBP8.08□□□□□ -1.12
VPS35-206ENST00000565228 ZNF43P17038 809 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 RRM2P31350 389 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 MNAT1P51948 309 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 BIDP55957 195 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 TUBA1BP68363 451 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 TUBA4AP68366 448 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 SPOCK1Q08629 439 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 DGCR6Q14129 220 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 SPATS1Q496A3 300 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 HIKESHIQ53FT3 197 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 ARMC4Q5T2S8 1044 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 ZNF770Q6IQ21 691 aaPredicted RBP8.08□□□□□ -1.12
VPS35-206ENST00000565228 LRFN4Q6PJG9 635 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 TUBA1AQ71U36 451 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 SLC35D2Q76EJ3 337 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 PIWIL3Q7Z3Z3 882 aaKnown RBP8.08□□□□□ -1.12
VPS35-206ENST00000565228 PXKQ7Z7A4 578 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 DHFR2Q86XF0 187 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 CDC20BQ86Y33 519 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 KIF18BQ86Y91 864 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 ZDHHC21Q8IVQ6 265 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 OR9Q2Q8NGE9 314 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 OR51A7Q8NH64 312 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 CANT1Q8WVQ1 401 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 HDAC2Q92769 488 aaKnown RBP8.08□□□□□ -1.12
VPS35-206ENST00000565228 BCL2L2Q92843 193 aaPredicted RBP8.08□□□□□ -1.12
VPS35-206ENST00000565228 TMEM54Q969K7 222 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 BPIFA2Q96DR5 249 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 TSPAN32Q96QS1 320 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 EPYCQ99645 322 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 TACO1Q9BSH4 297 aaKnown RBP8.08□□□□□ -1.12
VPS35-206ENST00000565228 ASPNQ9BXN1 380 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 SLCO5A1Q9H2Y9 848 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 GPR35Q9HC97 309 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 NDE1Q9NXR1 346 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 IL20RAQ9UHF4 553 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 HIF3AQ9Y2N7 669 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 MED31Q9Y3C7 131 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms