RNA–Protein interactions for RNA: ENST00000565038.1

PALB2-203, Transcript of partner and localizer of BRCA2, humanhuman

TSL 3

Gene PALB2, Length 344 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PALB2-203ENST00000565038 F11RQ9Y624 299 aaKnown RBP2.32□□□□□ -2.04
PALB2-203ENST00000565038 KIF16BQ96L93 1317 aa2.32□□□□□ -2.04
PALB2-203ENST00000565038 RPAP1Q9BWH6 1393 aaPredicted RBP2.32□□□□□ -2.04
PALB2-203ENST00000565038 IGLV3-22A0A075B6J6 115 aa2.31□□□□□ -2.04
PALB2-203ENST00000565038 SERPINE3A8MV23 424 aa2.31□□□□□ -2.04
PALB2-203ENST00000565038 K7EQM0 130 aa2.31□□□□□ -2.04
PALB2-203ENST00000565038 PRKAB2O43741 272 aa2.31□□□□□ -2.04
PALB2-203ENST00000565038 RAMP3O60896 148 aa2.31□□□□□ -2.04
PALB2-203ENST00000565038 CSF3P09919 207 aa2.31□□□□□ -2.04
PALB2-203ENST00000565038 TLX1NBP0CAT3 122 aa2.31□□□□□ -2.04
PALB2-203ENST00000565038 GNMTQ14749 295 aa2.31□□□□□ -2.04
PALB2-203ENST00000565038 ZBED5Q49AG3 693 aa2.31□□□□□ -2.04
PALB2-203ENST00000565038 CCDC92Q53HC0 331 aaPredicted RBP2.31□□□□□ -2.04
PALB2-203ENST00000565038 LYPD2Q6UXB3 125 aa2.31□□□□□ -2.04
PALB2-203ENST00000565038 GET4Q7L5D6 327 aaPredicted RBP2.31□□□□□ -2.04
PALB2-203ENST00000565038 ZADH2Q8N4Q0 377 aa2.31□□□□□ -2.04
PALB2-203ENST00000565038 GPATCH11Q8N954 259 aa2.31□□□□□ -2.04
PALB2-203ENST00000565038 FRZBQ92765 325 aa2.31□□□□□ -2.04
PALB2-203ENST00000565038 LRRC58Q96CX6 371 aa2.31□□□□□ -2.04
PALB2-203ENST00000565038 CXorf40BQ96DE9 158 aa2.31□□□□□ -2.04
PALB2-203ENST00000565038 AURKBQ96GD4 344 aaPredicted RBP2.31□□□□□ -2.04
PALB2-203ENST00000565038 SLC38A2Q96QD8 506 aa2.31□□□□□ -2.04
PALB2-203ENST00000565038 ZNF607Q96SK3 696 aa2.31□□□□□ -2.04
PALB2-203ENST00000565038 RANBP3Q9H6Z4 567 aaPredicted RBP2.31□□□□□ -2.04
PALB2-203ENST00000565038 LY9Q9HBG7 655 aa2.31□□□□□ -2.04
PALB2-203ENST00000565038 SPATA7Q9P0W8 599 aa2.31□□□□□ -2.04
PALB2-203ENST00000565038 XCL2Q9UBD3 114 aa2.31□□□□□ -2.04
PALB2-203ENST00000565038 KCNIP3Q9Y2W7 256 aa2.31□□□□□ -2.04
PALB2-203ENST00000565038 YTHDF2Q9Y5A9 579 aaKnown RBP2.31□□□□□ -2.04
PALB2-203ENST00000565038 NFASCO94856 1347 aa2.31□□□□□ -2.04
PALB2-203ENST00000565038 CCDC88BA6NC98 1476 aa2.31□□□□□ -2.04
PALB2-203ENST00000565038 AQRO60306 1485 aaKnown RBP eCLIP2.31□□□□□ -2.042e-7■□□□□ 8.7
PALB2-203ENST00000565038 ZNF608Q9ULD9 1512 aaPredicted RBP2.31□□□□□ -2.04
PALB2-203ENST00000565038 SMARCA4P51532 1647 aa2.31□□□□□ -2.04
PALB2-203ENST00000565038 H3BNH8 94 aa2.3□□□□□ -2.04
PALB2-203ENST00000565038 TOM1O60784 492 aa2.3□□□□□ -2.04
PALB2-203ENST00000565038 CD5P06127 495 aa2.3□□□□□ -2.04
PALB2-203ENST00000565038 RHOXF2BP0C7M4 288 aa2.3□□□□□ -2.04
PALB2-203ENST00000565038 IGHV3-43DP0DP04 118 aa2.3□□□□□ -2.04
PALB2-203ENST00000565038 PSMA5P28066 241 aa2.3□□□□□ -2.04
PALB2-203ENST00000565038 CCR1P32246 355 aa2.3□□□□□ -2.04
PALB2-203ENST00000565038 ABCA11PQ4W5N1 156 aa2.3□□□□□ -2.04
PALB2-203ENST00000565038 C5orf47Q569G3 176 aa2.3□□□□□ -2.04
PALB2-203ENST00000565038 COA6Q5JTJ3 125 aaKnown RBP2.3□□□□□ -2.04
PALB2-203ENST00000565038 CNIH2Q6PI25 160 aa2.3□□□□□ -2.04
PALB2-203ENST00000565038 IGFL1Q6UW32 110 aa2.3□□□□□ -2.04
PALB2-203ENST00000565038 PLA2G4DQ86XP0 818 aa2.3□□□□□ -2.04
PALB2-203ENST00000565038 VSTM4Q8IW00 320 aa2.3□□□□□ -2.04
PALB2-203ENST00000565038 PIANPQ8IYJ0 282 aa2.3□□□□□ -2.04
PALB2-203ENST00000565038 RNF182Q8N6D2 247 aa2.3□□□□□ -2.04
PALB2-203ENST00000565038 ZNF709Q8N972 641 aa2.3□□□□□ -2.04
PALB2-203ENST00000565038 MFSD9Q8NBP5 474 aa2.3□□□□□ -2.04
PALB2-203ENST00000565038 UBE2Q2Q8WVN8 375 aa2.3□□□□□ -2.04
PALB2-203ENST00000565038 EXOSC8Q96B26 276 aaKnown RBP2.3□□□□□ -2.04
PALB2-203ENST00000565038 ECSITQ9BQ95 431 aa2.3□□□□□ -2.04
PALB2-203ENST00000565038 YY1AP1Q9H869 796 aa2.3□□□□□ -2.04
PALB2-203ENST00000565038 ZNF430Q9H8G1 570 aaPredicted RBP2.3□□□□□ -2.04
PALB2-203ENST00000565038 SLC40A1Q9NP59 571 aa2.3□□□□□ -2.04
PALB2-203ENST00000565038 CTPS2Q9NRF8 586 aa2.3□□□□□ -2.04
PALB2-203ENST00000565038 SMOXQ9NWM0 555 aa2.3□□□□□ -2.04
PALB2-203ENST00000565038 BFARQ9NZS9 450 aa2.3□□□□□ -2.04
PALB2-203ENST00000565038 OPN4Q9UHM6 478 aa2.3□□□□□ -2.04
PALB2-203ENST00000565038 AP1M2Q9Y6Q5 423 aa2.3□□□□□ -2.04
PALB2-203ENST00000565038 FANCIQ9NVI1 1328 aa2.3□□□□□ -2.04
PALB2-203ENST00000565038 SMARCA2P51531 1590 aa2.3□□□□□ -2.04
PALB2-203ENST00000565038 WIZO95785 1651 aa2.3□□□□□ -2.04
PALB2-203ENST00000565038 PHF3Q92576 2039 aaKnown RBP2.3□□□□□ -2.04
PALB2-203ENST00000565038 URB2Q14146 1524 aaKnown RBP2.29□□□□□ -2.04
PALB2-203ENST00000565038 FANCD2Q9BXW9 1451 aa2.29□□□□□ -2.04
PALB2-203ENST00000565038 PNPLA6Q8IY17 1366 aa2.29□□□□□ -2.04
PALB2-203ENST00000565038 CIB4A0PJX0 185 aa2.29□□□□□ -2.04
PALB2-203ENST00000565038 OR5B21A6NL26 309 aa2.29□□□□□ -2.04
PALB2-203ENST00000565038 XKRYO14609 159 aa2.29□□□□□ -2.04
PALB2-203ENST00000565038 NCK1P16333 377 aa2.29□□□□□ -2.04
PALB2-203ENST00000565038 PGAM1P18669 254 aa2.29□□□□□ -2.04
PALB2-203ENST00000565038 ERVK-25P63136 954 aa2.29□□□□□ -2.04
PALB2-203ENST00000565038 STK11Q15831 433 aa2.29□□□□□ -2.04
PALB2-203ENST00000565038 SFT2D3Q587I9 215 aa2.29□□□□□ -2.04
PALB2-203ENST00000565038 OR4F3Q6IEY1 312 aa2.29□□□□□ -2.04
PALB2-203ENST00000565038 LINC00173Q6ZV60 143 aa2.29□□□□□ -2.04
PALB2-203ENST00000565038 ZSCAN30Q86W11 494 aa2.29□□□□□ -2.04
PALB2-203ENST00000565038 PGAM4Q8N0Y7 254 aa2.29□□□□□ -2.04
PALB2-203ENST00000565038 ZNF615Q8N8J6 731 aa2.29□□□□□ -2.04
PALB2-203ENST00000565038 VN1R2Q8NFZ6 395 aa2.29□□□□□ -2.04
PALB2-203ENST00000565038 OR2T3Q8NH03 318 aa2.29□□□□□ -2.04
PALB2-203ENST00000565038 CD300LFQ8TDQ1 290 aa2.29□□□□□ -2.04
PALB2-203ENST00000565038 DEDD2Q8WXF8 326 aa2.29□□□□□ -2.04
PALB2-203ENST00000565038 SMARCD2Q92925 531 aa2.29□□□□□ -2.04
PALB2-203ENST00000565038 RBM14Q96PK6 669 aaKnown RBP2.29□□□□□ -2.04
PALB2-203ENST00000565038 SPIN2AQ99865 258 aa2.29□□□□□ -2.04
PALB2-203ENST00000565038 SPIN2BQ9BPZ2 258 aa2.29□□□□□ -2.04
PALB2-203ENST00000565038 NDFIP1Q9BT67 221 aa2.29□□□□□ -2.04
PALB2-203ENST00000565038 RMND5AQ9H871 391 aa2.29□□□□□ -2.04
PALB2-203ENST00000565038 NOX3Q9HBY0 568 aa2.29□□□□□ -2.04
PALB2-203ENST00000565038 TM9SF3Q9HD45 589 aa2.29□□□□□ -2.04
PALB2-203ENST00000565038 POLE4Q9NR33 117 aa2.29□□□□□ -2.04
PALB2-203ENST00000565038 ZNF629Q9UEG4 869 aaPredicted RBP2.29□□□□□ -2.04
PALB2-203ENST00000565038 OR12D3Q9UGF7 316 aa2.29□□□□□ -2.04
PALB2-203ENST00000565038 SNX6Q9UNH7 406 aa2.29□□□□□ -2.04
PALB2-203ENST00000565038 BAZ1AQ9NRL2 1556 aaPredicted RBP2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms