RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 AQP5P55064 265 aa14.55□□□□□ -0.08
CLN3-211ENST00000564091 PIGFQ07326 219 aa14.55□□□□□ -0.08
CLN3-211ENST00000564091 CCNIQ14094 377 aa14.55□□□□□ -0.08
CLN3-211ENST00000564091 MS4A18Q3C1V0 323 aa14.55□□□□□ -0.08
CLN3-211ENST00000564091 WDFY1Q8IWB7 410 aa14.55□□□□□ -0.08
CLN3-211ENST00000564091 MIER2Q8N344 545 aa14.55□□□□□ -0.08
CLN3-211ENST00000564091 HPS1Q92902 700 aa14.55□□□□□ -0.08
CLN3-211ENST00000564091 SLC38A4Q969I6 547 aa14.55□□□□□ -0.08
CLN3-211ENST00000564091 SLC35B4Q969S0 331 aa14.55□□□□□ -0.08
CLN3-211ENST00000564091 C12orf10Q9HB07 376 aa14.55□□□□□ -0.08
CLN3-211ENST00000564091 B3GNT2Q9NY97 397 aa14.55□□□□□ -0.08
CLN3-211ENST00000564091 KLHL14Q9P2G3 628 aa14.55□□□□□ -0.08
CLN3-211ENST00000564091 CMAHPQ9Y471 501 aa14.55□□□□□ -0.08
CLN3-211ENST00000564091 LOC102725191A0A1B0GVB3 256 aa14.54□□□□□ -0.08
CLN3-211ENST00000564091 TPST1O60507 370 aa14.54□□□□□ -0.08
CLN3-211ENST00000564091 CD79AP11912 226 aa14.54□□□□□ -0.08
CLN3-211ENST00000564091 BMP2P12643 396 aa14.54□□□□□ -0.08
CLN3-211ENST00000564091 NQO1P15559 274 aaKnown RBP14.54□□□□□ -0.08
CLN3-211ENST00000564091 TCN1P20061 433 aaPredicted RBP14.54□□□□□ -0.08
CLN3-211ENST00000564091 NR4A1P22736 598 aa14.54□□□□□ -0.08
CLN3-211ENST00000564091 PRKAR1BP31321 381 aa14.54□□□□□ -0.08
CLN3-211ENST00000564091 CDH15P55291 814 aa14.54□□□□□ -0.08
CLN3-211ENST00000564091 GLIPR1L2Q4G1C9 344 aa14.54□□□□□ -0.08
CLN3-211ENST00000564091 ALG10BQ5I7T1 473 aa14.54□□□□□ -0.08
CLN3-211ENST00000564091 NET1Q7Z628 596 aaPredicted RBP14.54□□□□□ -0.08
CLN3-211ENST00000564091 UEVLDQ8IX04 471 aa14.54□□□□□ -0.08
CLN3-211ENST00000564091 CCDC36Q8IYA8 594 aa14.54□□□□□ -0.08
CLN3-211ENST00000564091 C20orf196Q8IYI0 205 aa14.54□□□□□ -0.08
CLN3-211ENST00000564091 C10orf111Q8N326 155 aa14.54□□□□□ -0.08
CLN3-211ENST00000564091 LSMEM1Q8N8F7 131 aa14.54□□□□□ -0.08
CLN3-211ENST00000564091 IL17RDQ8NFM7 739 aa14.54□□□□□ -0.08
CLN3-211ENST00000564091 NFKBIDQ8NI38 313 aa14.54□□□□□ -0.08
CLN3-211ENST00000564091 RNF217Q8TC41 542 aa14.54□□□□□ -0.08
CLN3-211ENST00000564091 TXNDC15Q96J42 360 aa14.54□□□□□ -0.08
CLN3-211ENST00000564091 MRPL37Q9BZE1 423 aaKnown RBP14.54□□□□□ -0.08
CLN3-211ENST00000564091 MED29Q9NX70 200 aa14.54□□□□□ -0.08
CLN3-211ENST00000564091 A0A087WUJ7 227 aa14.53□□□□□ -0.08
CLN3-211ENST00000564091 TCF21O43680 179 aa14.53□□□□□ -0.08
CLN3-211ENST00000564091 AKAP8O43823 692 aaKnown RBP14.53□□□□□ -0.08
CLN3-211ENST00000564091 ETS2P15036 469 aa14.53□□□□□ -0.08
CLN3-211ENST00000564091 HOXB9P17482 250 aaPredicted RBP14.53□□□□□ -0.08
CLN3-211ENST00000564091 GSG1Q2KHT4 349 aa14.53□□□□□ -0.08
CLN3-211ENST00000564091 C5orf46Q6UWT4 87 aa14.53□□□□□ -0.08
CLN3-211ENST00000564091 ZNF813Q6ZN06 617 aa14.53□□□□□ -0.08
CLN3-211ENST00000564091 CARM1Q86X55 608 aa14.53□□□□□ -0.08
CLN3-211ENST00000564091 RFLNBQ8N5W9 214 aa14.53□□□□□ -0.08
CLN3-211ENST00000564091 DNAJA4Q8WW22 397 aaPredicted RBP14.53□□□□□ -0.08
CLN3-211ENST00000564091 MRPL24Q96A35 216 aaKnown RBP14.53□□□□□ -0.08
CLN3-211ENST00000564091 RAD21L1Q9H4I0 556 aa14.53□□□□□ -0.08
CLN3-211ENST00000564091 SLC25A37Q9NYZ2 338 aa14.53□□□□□ -0.08
CLN3-211ENST00000564091 SLAMF8Q9P0V8 285 aa14.53□□□□□ -0.08
CLN3-211ENST00000564091 REV1Q9UBZ9 1251 aa14.53□□□□□ -0.08
CLN3-211ENST00000564091 LRRN3E7EW58 273 aa14.52□□□□□ -0.09
CLN3-211ENST00000564091 B4GALT1P15291 398 aa14.52□□□□□ -0.09
CLN3-211ENST00000564091 ITGA2P17301 1181 aa14.52□□□□□ -0.09
CLN3-211ENST00000564091 ALDH3B1P43353 468 aa14.52□□□□□ -0.09
CLN3-211ENST00000564091 SEC24CP53992 1094 aa14.52□□□□□ -0.09
CLN3-211ENST00000564091 POU3F1Q03052 451 aaPredicted RBP14.52□□□□□ -0.09
CLN3-211ENST00000564091 FADDQ13158 208 aa14.52□□□□□ -0.09
CLN3-211ENST00000564091 ELFN2Q5R3F8 820 aa14.52□□□□□ -0.09
CLN3-211ENST00000564091 GCNT6Q5T4J0 391 aa14.52□□□□□ -0.09
CLN3-211ENST00000564091 ULK3Q6PHR2 472 aa14.52□□□□□ -0.09
CLN3-211ENST00000564091 DHRS4L2Q6PKH6 230 aa14.52□□□□□ -0.09
CLN3-211ENST00000564091 NHLRC1Q6VVB1 395 aa14.52□□□□□ -0.09
CLN3-211ENST00000564091 RINLQ6ZS11 566 aa14.52□□□□□ -0.09
CLN3-211ENST00000564091 MSRB3Q8IXL7 192 aa14.52□□□□□ -0.09
CLN3-211ENST00000564091 ADPRHL1Q8NDY3 354 aa14.52□□□□□ -0.09
CLN3-211ENST00000564091 SLC41A3Q96GZ6 507 aa14.52□□□□□ -0.09
CLN3-211ENST00000564091 ZNF75AQ96N20 296 aa14.52□□□□□ -0.09
CLN3-211ENST00000564091 SYT3Q9BQG1 590 aa14.52□□□□□ -0.09
CLN3-211ENST00000564091 WFDC6Q9BQY6 131 aa14.52□□□□□ -0.09
CLN3-211ENST00000564091 FZR1Q9UM11 496 aa14.52□□□□□ -0.09
CLN3-211ENST00000564091 POFUT2Q9Y2G5 429 aa14.52□□□□□ -0.09
CLN3-211ENST00000564091 M0R233 179 aa14.51□□□□□ -0.09
CLN3-211ENST00000564091 SYNGR3O43761 229 aa14.51□□□□□ -0.09
CLN3-211ENST00000564091 TPST2O60704 377 aa14.51□□□□□ -0.09
CLN3-211ENST00000564091 SERPINI2O75830 405 aa14.51□□□□□ -0.09
CLN3-211ENST00000564091 HPXP02790 462 aa14.51□□□□□ -0.09
CLN3-211ENST00000564091 BGLAPP02818 100 aa14.51□□□□□ -0.09
CLN3-211ENST00000564091 ARAFP10398 606 aa14.51□□□□□ -0.09
CLN3-211ENST00000564091 ZNF35P13682 527 aa14.51□□□□□ -0.09
CLN3-211ENST00000564091 ZNF14P17017 642 aaPredicted RBP14.51□□□□□ -0.09
CLN3-211ENST00000564091 COL8A2P25067 703 aa14.51□□□□□ -0.09
CLN3-211ENST00000564091 GIPRP48546 466 aa14.51□□□□□ -0.09
CLN3-211ENST00000564091 PTDSS1P48651 473 aaKnown RBP14.51□□□□□ -0.09
CLN3-211ENST00000564091 CDK6Q00534 326 aa14.51□□□□□ -0.09
CLN3-211ENST00000564091 PMS2P3Q13401 168 aa14.51□□□□□ -0.09
CLN3-211ENST00000564091 CAMK2DQ13557 499 aa14.51□□□□□ -0.09
CLN3-211ENST00000564091 MFSD13AQ14CX5 517 aa14.51□□□□□ -0.09
CLN3-211ENST00000564091 MAD2L1BPQ15013 274 aaPredicted RBP14.51□□□□□ -0.09
CLN3-211ENST00000564091 OR1Q1Q15612 314 aa14.51□□□□□ -0.09
CLN3-211ENST00000564091 CROCCP2Q86T23 111 aa14.51□□□□□ -0.09
CLN3-211ENST00000564091 LRP11Q86VZ4 500 aa14.51□□□□□ -0.09
CLN3-211ENST00000564091 GOLGA6L1Q8N7Z2 621 aa14.51□□□□□ -0.09
CLN3-211ENST00000564091 OR6N1Q8NGY5 312 aa14.51□□□□□ -0.09
CLN3-211ENST00000564091 SLC47A1Q96FL8 570 aa14.51□□□□□ -0.09
CLN3-211ENST00000564091 LRR1Q96L50 414 aa14.51□□□□□ -0.09
CLN3-211ENST00000564091 MOGAT1Q96PD6 335 aa14.51□□□□□ -0.09
CLN3-211ENST00000564091 NARFLQ9H6Q4 476 aa14.51□□□□□ -0.09
CLN3-211ENST00000564091 RAB21Q9UL25 225 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms